From: Sergey Litvinov <slitvinov@gmail.com>
To: emacs-orgmode@gnu.org
Subject: [org-babel] a patch with fortran support
Date: Sun, 17 Jul 2011 15:42:33 +0200 [thread overview]
Message-ID: <CAEBOWYAmbwOvWu6GBaoOkGhWU=pFMWKdOvfQmeAqRNBNcmBfsg@mail.gmail.com> (raw)
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Please consider an implementation of fortran support for
org-babel. The patch adds contrib/babel/langs/ob-fortran.el
(modification of lisp/ob-C.el) and
testing/examples/ob-fortran-test.org with tests.
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From a18cbc80770d985d6ca6bdada07120f7daf65c02 Mon Sep 17 00:00:00 2001
From: Litvinov Sergey <slitvinov@gmail.com>
Date: Sun, 17 Jul 2011 15:31:03 +0200
Subject: [PATCH] Add fortran support to babel
---
contrib/babel/langs/ob-fortran.el | 191 ++++++++++++++++++++++++++++++++++
testing/examples/ob-fortran-test.org | 67 ++++++++++++
2 files changed, 258 insertions(+), 0 deletions(-)
create mode 100644 contrib/babel/langs/ob-fortran.el
create mode 100644 testing/examples/ob-fortran-test.org
diff --git a/contrib/babel/langs/ob-fortran.el b/contrib/babel/langs/ob-fortran.el
new file mode 100644
index 0000000..bb6948f
--- /dev/null
+++ b/contrib/babel/langs/ob-fortran.el
@@ -0,0 +1,191 @@
+;;; ob-fortran.el --- org-babel functions for fortran
+;; Copyright (C) 2010 Free Software Foundation, Inc.
+
+;; Author: Sergey Litvinov (based on ob-C.el by Eric Schulte)
+;; Keywords: literate programming, reproducible research, fortran
+;; Homepage: http://orgmode.org
+;; Version: 7.6
+
+;; This file is part of GNU Emacs.
+
+;; GNU Emacs is free software: you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation, either version 3 of the License, or
+;; (at your option) any later version.
+
+;; GNU Emacs is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+;; GNU General Public License for more details.
+
+;; You should have received a copy of the GNU General Public License
+;; along with GNU Emacs. If not, see <http://www.gnu.org/licenses/>.
+
+;;; Commentary:
+
+;; Org-Babel support for evaluating fortran code.
+;;
+
+;;; Code:
+
+;; Org-Babel support for evaluating fortran code.
+;;
+
+(require 'ob)
+(require 'ob-eval)
+(require 'cc-mode)
+
+(declare-function org-entry-get "org"
+ (pom property &optional inherit literal-nil))
+
+(defvar org-babel-tangle-lang-exts)
+(add-to-list 'org-babel-tangle-lang-exts '("fortran" . "F90"))
+
+(defvar org-babel-default-header-args:fortran '())
+
+(defvar org-babel-fortran-compiler "gfortran"
+ "fortran command used to compile a fortran source code file into an
+ executable.")
+
+(defun org-babel-execute:fortran (body params)
+ "Execute BODY according to PARAMS. This function calls
+`org-babel-execute:fortran'."
+ (org-babel-execute:fortran body params))
+
+(defun org-babel-execute:fortran (body params)
+ "Execute a block of fortran code with org-babel. This function is
+called by `org-babel-execute-src-block'."
+ (org-babel-fortran-execute body params))
+
+(defun org-babel-expand-body:fortran (body params)
+ "Expand a block of fortran code with org-babel according to it's
+header arguments (calls `org-babel-fortran-expand')."
+ (org-babel-fortran-expand body params))
+
+(defun org-babel-execute:fortran (body params)
+ "Execute a block of fortran code with org-babel. This function is
+called by `org-babel-execute-src-block'."
+ (org-babel-fortran-execute body params))
+
+(defun org-babel-expand-body:fortran (body params)
+ "Expand a block of fortran code with org-babel according to it's
+header arguments (calls `org-babel-fortran-expand')."
+ (org-babel-fortran-expand body params))
+
+(defun org-babel-fortran-execute (body params)
+ "This function should only be called by `org-babel-execute:fortran'"
+ (let* ((tmp-src-file (org-babel-temp-file
+ "fortran-src-"
+ ".F90"))
+ (tmp-bin-file (org-babel-temp-file "fortran-bin-"))
+ (cmdline (cdr (assoc :cmdline params)))
+ (flags (cdr (assoc :flags params)))
+ (full-body (org-babel-fortran-expand body params))
+ (compile
+ (progn
+ (with-temp-file tmp-src-file (insert full-body))
+ (org-babel-eval
+ (format "%s -o %s %s %s"
+ org-babel-fortran-compiler
+ (org-babel-process-file-name tmp-bin-file)
+ (mapconcat 'identity
+ (if (listp flags) flags (list flags)) " ")
+ (org-babel-process-file-name tmp-src-file)) ""))))
+ ((lambda (results)
+ (org-babel-reassemble-table
+ (if (member "vector" (cdr (assoc :result-params params)))
+ (let ((tmp-file (org-babel-temp-file "f-")))
+ (with-temp-file tmp-file (insert results))
+ (org-babel-import-elisp-from-file tmp-file))
+ (org-babel-read results))
+ (org-babel-pick-name
+ (cdr (assoc :colname-names params)) (cdr (assoc :colnames params)))
+ (org-babel-pick-name
+ (cdr (assoc :rowname-names params)) (cdr (assoc :rownames params)))))
+ (org-babel-trim
+ (org-babel-eval
+ (concat tmp-bin-file (if cmdline (concat " " cmdline) "")) "")))))
+
+(defun org-babel-fortran-expand (body params)
+ "Expand a block of fortran or fortran code with org-babel according to
+it's header arguments."
+ (let ((vars (mapcar #'cdr (org-babel-get-header params :var)))
+ (main-p (not (string= (cdr (assoc :main params)) "no")))
+ (includes (or (cdr (assoc :includes params))
+ (org-babel-read (org-entry-get nil "includes" t))))
+ (defines (org-babel-read
+ (or (cdr (assoc :defines params))
+ (org-babel-read (org-entry-get nil "defines" t))))))
+ (mapconcat 'identity
+ (list
+ ;; includes
+ (mapconcat
+ (lambda (inc) (format "#include %s" inc))
+ (if (listp includes) includes (list includes)) "\n")
+ ;; defines
+ (mapconcat
+ (lambda (inc) (format "#define %s" inc))
+ (if (listp defines) defines (list defines)) "\n")
+ ;; body
+ (if main-p
+ (org-babel-fortran-ensure-main-wrap
+ (concat
+ ;; variables
+ (mapconcat 'org-babel-fortran-var-to-fortran vars "\n")
+ body))
+ body) "\n") "\n")))
+
+(defun org-babel-fortran-ensure-main-wrap (body)
+ "Wrap body in a \"program ... end program\" block if none exists."
+ (if (string-match "^[ \t]*program[ \t]*.*" (capitalize body))
+ (let ((vars (mapcar #'cdr (org-babel-get-header params :var))))
+ (if vars (error "cannot use :vars if 'program' statment is present"))
+ body)
+ (format "program main\n%s\nend program main\n" body)))
+
+(defun org-babel-prep-session:fortran (session params)
+ "This function does nothing as fortran is a compiled language with no
+support for sessions"
+ (error "fortran is a compiled languages -- no support for sessions"))
+
+(defun org-babel-load-session:fortran (session body params)
+ "This function does nothing as fortran is a compiled language with no
+support for sessions"
+ (error "fortran is a compiled languages -- no support for sessions"))
+
+;; helper functions
+
+(defun org-babel-fortran-var-to-fortran (pair)
+ "fortranonvert an elisp val into a string of fortran code specifying a var
+of the same value."
+ ;; TODO list support
+ (let ((var (car pair))
+ (val (cdr pair)))
+ (when (symbolp val)
+ (setq val (symbol-name val))
+ (when (= (length val) 1)
+ (setq val (string-to-char val))))
+ (cond
+ ((integerp val)
+ (format "integer, parameter :: %S = %S\n" var val))
+ ((floatp val)
+ (format "real, parameter :: %S = %S\n" var val))
+ ((or (characterp val))
+ (format "character, parameter :: %S = '%S'\n" var val))
+ ((stringp val)
+ (format "character, parameter :: %S(%d) = '%s'\n"
+ var (length val) val))
+ ((listp val)
+ (format "real, parameter :: %S(%d) = %s\n" var (length val) (ob-fortran-transform-list val)))
+ (t
+ (error (format "the type of parameter %s is not supported by ob-fortran" var))))))
+
+(defun ob-fortran-transform-list (val)
+ "Return a fortran representation of enclose syntactic lists."
+ (if (listp val)
+ (concat "(/" (mapconcat #'ob-fortran-parse-list val ", ") "/)")
+ (format "%S" val)))
+
+(provide 'ob-fortran)
+
+;;; ob-fortran.el ends here
diff --git a/testing/examples/ob-fortran-test.org b/testing/examples/ob-fortran-test.org
new file mode 100644
index 0000000..6906b24
--- /dev/null
+++ b/testing/examples/ob-fortran-test.org
@@ -0,0 +1,67 @@
+* Test org fortran file
+#+begin_src fortran
+print *, 'Hello world'
+#+end_src
+
+#+begin_src fortran
+integer, parameter :: i = 10
+print *, 'i = ', i
+#+end_src
+
+#+begin_src fortran :var N = 10
+print *, 'N = ', N
+#+end_src
+
+Define for preprocessed fortran
+#+begin_src fortran :defines N 42
+implicit none
+print *, 'N = ', N
+#+end_src
+
+#+begin_src fortran :var s="word"
+print *, 's = ', s
+print *, 'size(s) = ', size(s)
+#+end_src
+
+#+begin_src fortran :var s=42.0
+print *, 's = ', s
+print *, 'kind(s) = ', kind(s)
+#+end_src
+
+#+begin_src fortran
+program ex
+print *, "output of ex program"
+end program ex
+#+end_src
+
+Should fail (TODO: add input variables for the case with explicit
+program statement)
+#+begin_src fortran :var s="word"
+program ex
+print *, "output of ex program"
+end program ex
+#+end_src
+
+Real array as input
+#+begin_src fortran :var s='(1.0 2.0 3.0)
+print *, s
+#+end_src
+
+Fails to compile (TODO: error check in ob-fortran.el)
+#+begin_src fortran :var s='(1 ())
+print *, s
+#+end_src
+
+Should fail to compile with gfortran
+#+begin_src fortran :flags --std=f95 --pedantic-error
+program ex
+integer*8 :: i
+end program ex
+#+end_src
+
+Pass parameters to the program
+#+begin_src fortran :cmdline "23"
+character(len=255) :: cmd
+call get_command(cmd)
+write (*,*) trim(cmd)
+#+end_src
--
1.7.4.1
next reply other threads:[~2011-07-17 13:42 UTC|newest]
Thread overview: 3+ messages / expand[flat|nested] mbox.gz Atom feed top
2011-07-17 13:42 Sergey Litvinov [this message]
2011-07-19 14:10 ` [org-babel] a patch with fortran support Bastien
2011-07-19 14:33 ` Eric Schulte
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