I'm reluctant to filtering it out unconditionally, because the font-backend is something the users can specify for themselves, perhaps to fix some problem with their installation.
The "right" fix, I think, would be either:
- To filter it out when saving, if it is the default (i.e., '(harfbuzz gdi) on Windows, currently), or
- To filter it out when loading, if the saved value is not supported on the running instance of Emacs.
The problem is, there's no way to get a list of supported font backends from elisp, there is?