I've tried to fix it by making the changes similar to the abovementioned commit and it seems to work:
The following information was taken after applying the above fix (otherwise emacs did not compile):
In GNU Emacs 25.1.50.16 (x86_64-apple-darwin15.5.0, NS appkit-1404.47 Version 10.11.5 (Build 15F34))
of 2016-06-19 built on feline.local
Repository revision: 2ede29575fa22eb7c265117d7511cff9fe02c606
Windowing system distributor 'Apple', version 10.3.1404
Recent messages:
Checking 34 files in /Applications/Emacs-20160619.app/Contents/Resources/lisp/emulation...
Checking 172 files in /Applications/Emacs-20160619.app/Contents/Resources/lisp/emacs-lisp...
Checking 24 files in /Applications/Emacs-20160619.app/Contents/Resources/lisp/cedet...
Checking 57 files in /Applications/Emacs-20160619.app/Contents/Resources/lisp/calendar...
Checking 87 files in /Applications/Emacs-20160619.app/Contents/Resources/lisp/calc...
Checking 101 files in /Applications/Emacs-20160619.app/Contents/Resources/lisp/obsolete...
Checking for load-path shadows...done
scroll-down-command: Beginning of buffer
C-c k is undefined
Buffer *unsent mail to bug-gnu-emacs* modified; kill anyway? (y or n) y
Quit
Configured using:
'configure --without-gnutls'
Configured features:
DBUS NOTIFY ACL LIBXML2 ZLIB TOOLKIT_SCROLL_BARS NS
Important settings:
value of $LANG: en_IL.UTF-8
locale-coding-system: utf-8-unix
Major mode: ObjC/l
Minor modes in effect:
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yas-minor-mode: t
global-anzu-mode: t
anzu-mode: t
which-function-mode: t
diff-auto-refine-mode: t
rainbow-delimiters-mode: t
paredit-everywhere-mode: t
ws-butler-mode: t
highlight-numbers-mode: t
flycheck-mode: t
recentf-mode: t
global-edit-server-edit-mode: t
global-company-mode: t
company-mode: t
keyfreq-autosave-mode: t
keyfreq-mode: t
helm-mode: t
shell-dirtrack-mode: t
async-bytecomp-package-mode: t
guide-key-mode: t
global-undo-tree-mode: t
undo-tree-mode: t
beacon-mode: t
display-time-mode: t
savehist-mode: t
winner-mode: t
show-paren-mode: t
global-auto-revert-mode: t
delete-selection-mode: t
display-battery-mode: t
auto-compile-on-load-mode: t
override-global-mode: t
tooltip-mode: t
global-eldoc-mode: t
electric-indent-mode: t
mouse-wheel-mode: t
menu-bar-mode: t
file-name-shadow-mode: t
global-font-lock-mode: t
font-lock-mode: t
blink-cursor-mode: t
auto-composition-mode: t
auto-encryption-mode: t
auto-compression-mode: t
column-number-mode: t
line-number-mode: t
transient-mark-mode: t
abbrev-mode: t
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~/sources/org-mode/lisp/org-datetree hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/org-datetree
~/sources/org-mode/lisp/org-ctags hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/org-ctags
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~/sources/org-mode/lisp/org-bbdb hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/org-bbdb
~/sources/org-mode/lisp/org-attach hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/org-attach
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~/sources/org-mode/lisp/org-agenda hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/org-agenda
~/sources/org-mode/lisp/ob hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/ob
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~/sources/org-mode/lisp/ob-table hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/ob-table
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~/sources/org-mode/lisp/ob-sql hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/ob-sql
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~/sources/org-mode/lisp/ob-screen hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/ob-screen
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~/sources/org-mode/lisp/ob-picolisp hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/ob-picolisp
~/sources/org-mode/lisp/ob-perl hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/ob-perl
~/sources/org-mode/lisp/ob-org hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/ob-org
~/sources/org-mode/lisp/ob-octave hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/ob-octave
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~/sources/org-mode/lisp/ob-mscgen hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/ob-mscgen
~/sources/org-mode/lisp/ob-maxima hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/ob-maxima
~/sources/org-mode/lisp/ob-matlab hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/ob-matlab
~/sources/org-mode/lisp/ob-makefile hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/ob-makefile
~/sources/org-mode/lisp/ob-lob hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/ob-lob
~/sources/org-mode/lisp/ob-lisp hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/ob-lisp
~/sources/org-mode/lisp/ob-lilypond hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/ob-lilypond
~/sources/org-mode/lisp/ob-ledger hides /Applications/Emacs-20160619.app/Contents/Resources/lisp/org/ob-ledger
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Features:
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derived epg gnus-util rmail rmail-loaddefs mm-decode mm-bodies mm-encode
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which-func imenu misearch multi-isearch darktooth-theme helm-command
vc-git diff-mode cc-mode-expansions cc-mode cc-fonts cc-guess cc-menus
cc-cmds cc-styles cc-align cc-engine cc-vars cc-defs ido warnings
company-tern dash-functional tern url-http tls gnutls url-auth
mail-parse rfc2231 rfc2047 rfc2045 mm-util ietf-drums mail-prsvr url-gw
nsm puny rainbow-delimiters paredit-everywhere paredit ws-butler
highlight-numbers parent-mode flycheck json map find-func subr-x recentf
tree-widget solarized-dark-theme solarized color cus-edit cus-start
cus-load wid-edit css-mode-expansions css-mode smie html-mode-expansions
sgml-mode hydra lv edit-server-htmlize html2text edit-server
helm-company helm-elisp helm-eval edebug company-oddmuse
company-keywords company-etags etags xref project company-gtags
company-dabbrev-code company-dabbrev company-files company-capf
company-cmake company-xcode company-clang company-semantic company-eclim
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helm-info bookmark pp helm-locate helm-grep helm-regexp helm-plugin
helm-external helm-net browse-url xml url url-proxy url-privacy
url-expand url-methods url-history url-cookie url-domsuf url-util
mailcap helm-utils compile comint ansi-color helm-help helm-types helm
helm-source eieio-compat helm-multi-match helm-lib dired dired-loaddefs
helm-config helm-easymenu async-bytecomp async guide-key s popwin
undo-tree diff beacon exec-path-from-shell edmacro kmacro time savehist
winner ring paren autorevert filenotify delsel battery server jka-compr
auto-compile advice packed dash use-package diminish bind-key easy-mmode
tex-site slime-autoloads info finder-inf package epg-config url-handlers
url-parse auth-source cl-seq eieio eieio-core cl-macs eieio-loaddefs
password-cache url-vars seq byte-opt gv bytecomp byte-compile cl-extra
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tooltip eldoc electric uniquify ediff-hook vc-hooks lisp-float-type
mwheel term/ns-win ns-win ucs-normalize term/common-win tool-bar dnd
fontset image regexp-opt fringe tabulated-list newcomment elisp-mode
lisp-mode prog-mode register page menu-bar rfn-eshadow timer select
scroll-bar mouse jit-lock font-lock syntax facemenu font-core
term/tty-colors frame cl-generic cham georgian utf-8-lang misc-lang
vietnamese tibetan thai tai-viet lao korean japanese eucjp-ms cp51932
hebrew greek romanian slovak czech european ethiopic indian cyrillic
chinese charscript case-table epa-hook jka-cmpr-hook help simple abbrev
obarray minibuffer cl-preloaded nadvice loaddefs button faces cus-face
macroexp files text-properties overlay sha1 md5 base64 format env
code-pages mule custom widget hashtable-print-readable backquote
dbusbind kqueue cocoa ns multi-tty make-network-process emacs)
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