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* Org babel Python and R, table not transformed when :var is called ?
@ 2021-12-01  8:04 Sébastien Rey-Coyrehourcq
  2021-12-02 11:10 ` Sébastien Rey-Coyrehourcq
  2022-10-16 11:23 ` Ihor Radchenko
  0 siblings, 2 replies; 3+ messages in thread
From: Sébastien Rey-Coyrehourcq @ 2021-12-01  8:04 UTC (permalink / raw)
  To: emacs-orgmode


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Hi there,

Perhaps it's a bug, or something i don't understand, i post on reddit 
(https://www.reddit.com/r/emacs/comments/r5yt4a/r_talking_with_python_using_orgtable_not_work/) 
to see if people on org community know the problem.

I cross post here to see if it's a know bug or somethings ?

There is something i don't understand,
a difference between behavior of org-babel and org-mode when you use org 
table to pass data using or not using :var.

|#+NAME:mypythoncode #+begin_src python :results value raw :output 
:return tabulate(df, headers=df.columns, tablefmt='orgtbl') import numpy 
as np import pandas as pd from tabulate import tabulate df = 
pd.DataFrame(np.random.randint(0,10,size=(10, 4)), columns=list('ABCD')) 
#+end_src #+RESULTS: mypythoncode | | A | B | C | D | 
|---+---+---+---+---| | 0 | 0 | 9 | 6 | 0 | | 1 | 2 | 9 | 0 | 4 | | 2 | 
9 | 6 | 0 | 1 | | 3 | 6 | 1 | 8 | 1 | | 4 | 4 | 2 | 1 | 4 | | 5 | 2 | 1 
| 1 | 1 | | 6 | 4 | 8 | 9 | 0 | | 7 | 1 | 4 | 8 | 7 | | 8 | 9 | 3 | 2 | 
5 | | 9 | 5 | 0 | 7 | 3 | #+NAME:lib-R #+HEADER: :var code=mypythoncode 
#+begin_src R :results output library(ggplot2) library(dplyr) 
library(lubridate) str(code) #+end_src #+RESULTS: lib-R : chr "| | A | B 
| C | D |\n|----+-----+-----+-----+-----|\n| 0 | 8 | 0 | 5 | 2 |\n| 1 | 
2 | "| __truncated__ |

As you see, the org table is not recognized as a dataframe by R.

If i replace by a basic org table :

|||#+NAME: any_data | | parameter | value | |---+-----------+-------| | 0 
| heats | 30 | | 1 | heats | 30 | #+NAME:lib-R #+HEADER: :var 
code=any_data #+begin_src R :results output library(ggplot2) 
library(dplyr) library(lubridate) str(code) #+end_src #+RESULTS: lib-R : 
'data.frame': 2 obs. of 3 variables: : $ X : int 0 1 : $ parameter: chr 
"heats" "heats" : $ value : int 30 30 |||

That works...

Best regards,

||


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^ permalink raw reply	[flat|nested] 3+ messages in thread

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Thread overview: 3+ messages (download: mbox.gz follow: Atom feed
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2021-12-01  8:04 Org babel Python and R, table not transformed when :var is called ? Sébastien Rey-Coyrehourcq
2021-12-02 11:10 ` Sébastien Rey-Coyrehourcq
2022-10-16 11:23 ` Ihor Radchenko

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