strange error exporting to ascii

strange error exporting to ascii

[Fraga, Eric]

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Hello,

I am working on a paper which includes citations.  Exporting to LaTeX
and to ODT worked just fine.  For my sins, I now have to incorporate
changes made to the ODT version back into the org and I thought the best
way was to compare text versions (I did try using pandoc on the ODT
version to get an org version but too many differences).

So, long story short, I try to export the original document to ascii and
I get an error related to citations.  Having seen some updates to
exporting citations on the list over the past few weeks, I figured I
should upgrade org to the latest version.  Now exporting to LaTeX still
works just fine but exporting to ascii still does not work (with the
same error: see backtrace-ascii.txt attached) *and* exporting to ODT now
no longer works (see backtrace-odt.txt).

Any suggestions?  I have not tried emacs -Q because that is non-trivial
due to my configuration but will do so if nothing obvious jumps out to
anybody.

Thank you,
eric

-- 
: Eric S Fraga, with org release_9.6.8-771-gdf0539 in Emacs 30.0.50

[-- Attachment #2: backtrace-ascii.txt --]
[-- Type: text/plain, Size: 23167 bytes --]

Debugger entered--Lisp error: (wrong-type-argument stringp nil)
  file-name-extension(nil)
  (equal (file-name-extension file) "bib")
  (if (equal (file-name-extension file) "bib") (file-name-sans-extension file) file)
  (setq file (if (equal (file-name-extension file) "bib") (file-name-sans-extension file) file))
  (let ((arguments (org-bibtex-get-arguments keyword)) (file (org-bibtex-get-file keyword)) temp-file out-file) (setq file (if (equal (file-name-extension file) "bib") (file-name-sans-extension file) file)) (setq out-file (file-name-sans-extension (file-name-nondirectory file))) (if (plist-get arguments :limit) (progn (let ((citations (org-element-map tree '... #'...))) (let ((temp-file (setq temp-file ...)) (temp-buffer (generate-new-buffer " *temp file*" t))) (unwind-protect (prog1 (save-current-buffer ... ...) (save-current-buffer ... ...)) (and (buffer-name temp-buffer) (kill-buffer temp-buffer)))) (setq arguments (plist-put arguments :options (append (plist-get arguments :options) (list "-citefile" temp-file))))))) (if (eq 0 (apply 'call-process (append '("bibtex2html" nil nil nil) '("-a" "-nodoc" "-noheader" "-nofooter") (let ((style ...)) (and style (list "--style" style))) (plist-get arguments :options) (list (concat file ".bib"))))) nil (error "Executing bibtex2html failed")) (and temp-file (delete-file temp-file)) (let ((temp-buffer (generate-new-buffer " *temp*" t))) (save-current-buffer (set-buffer temp-buffer) (unwind-protect (progn (insert-file-contents (concat out-file ".html")) (goto-char (point-min)) (while (re-search-forward "a name=\"\\([-_a-zA-Z0-9:]+\\)\">\\([^<]+\\)" nil t) (setq org-bibtex-html-entries-alist (cons ... org-bibtex-html-entries-alist)))) (and (buffer-name temp-buffer) (kill-buffer temp-buffer))))) (let ((temp-buffer (generate-new-buffer " *temp*" t))) (save-current-buffer (set-buffer temp-buffer) (unwind-protect (progn (cond ((org-export-derived-backend-p backend ...) (insert ...) (insert-file-contents ...) (goto-char ...) (insert "\n</div>")) ((org-export-derived-backend-p backend ...) (if ... nil ...) (insert ...) (insert-file-contents ...) (goto-char ...) (while ... ...) (goto-char ...) (while ... ...) (goto-char ...) (while ... ...))) (setq org-bibtex-html-keywords-alist (cons (cons keyword ...) org-bibtex-html-keywords-alist))) (and (buffer-name temp-buffer) (kill-buffer temp-buffer))))))
  (progn (let ((arguments (org-bibtex-get-arguments keyword)) (file (org-bibtex-get-file keyword)) temp-file out-file) (setq file (if (equal (file-name-extension file) "bib") (file-name-sans-extension file) file)) (setq out-file (file-name-sans-extension (file-name-nondirectory file))) (if (plist-get arguments :limit) (progn (let ((citations (org-element-map tree ... ...))) (let ((temp-file ...) (temp-buffer ...)) (unwind-protect (prog1 ... ...) (and ... ...))) (setq arguments (plist-put arguments :options (append ... ...)))))) (if (eq 0 (apply 'call-process (append '("bibtex2html" nil nil nil) '("-a" "-nodoc" "-noheader" "-nofooter") (let (...) (and style ...)) (plist-get arguments :options) (list (concat file ".bib"))))) nil (error "Executing bibtex2html failed")) (and temp-file (delete-file temp-file)) (let ((temp-buffer (generate-new-buffer " *temp*" t))) (save-current-buffer (set-buffer temp-buffer) (unwind-protect (progn (insert-file-contents (concat out-file ".html")) (goto-char (point-min)) (while (re-search-forward "a name=\"\\([-_a-zA-Z0-9:]+\\)\">\\([^<]+\\)" nil t) (setq org-bibtex-html-entries-alist ...))) (and (buffer-name temp-buffer) (kill-buffer temp-buffer))))) (let ((temp-buffer (generate-new-buffer " *temp*" t))) (save-current-buffer (set-buffer temp-buffer) (unwind-protect (progn (cond (... ... ... ... ...) (... ... ... ... ... ... ... ... ... ...)) (setq org-bibtex-html-keywords-alist (cons ... org-bibtex-html-keywords-alist))) (and (buffer-name temp-buffer) (kill-buffer temp-buffer)))))))
  (if (equal (org-element--property :key keyword nil nil) "BIBLIOGRAPHY") (progn (let ((arguments (org-bibtex-get-arguments keyword)) (file (org-bibtex-get-file keyword)) temp-file out-file) (setq file (if (equal (file-name-extension file) "bib") (file-name-sans-extension file) file)) (setq out-file (file-name-sans-extension (file-name-nondirectory file))) (if (plist-get arguments :limit) (progn (let ((citations ...)) (let (... ...) (unwind-protect ... ...)) (setq arguments (plist-put arguments :options ...))))) (if (eq 0 (apply 'call-process (append '... '... (let ... ...) (plist-get arguments :options) (list ...)))) nil (error "Executing bibtex2html failed")) (and temp-file (delete-file temp-file)) (let ((temp-buffer (generate-new-buffer " *temp*" t))) (save-current-buffer (set-buffer temp-buffer) (unwind-protect (progn (insert-file-contents ...) (goto-char ...) (while ... ...)) (and (buffer-name temp-buffer) (kill-buffer temp-buffer))))) (let ((temp-buffer (generate-new-buffer " *temp*" t))) (save-current-buffer (set-buffer temp-buffer) (unwind-protect (progn (cond ... ...) (setq org-bibtex-html-keywords-alist ...)) (and (buffer-name temp-buffer) (kill-buffer temp-buffer))))))))
  (lambda (keyword) (if (equal (org-element--property :key keyword nil nil) "BIBLIOGRAPHY") (progn (let ((arguments (org-bibtex-get-arguments keyword)) (file (org-bibtex-get-file keyword)) temp-file out-file) (setq file (if (equal ... "bib") (file-name-sans-extension file) file)) (setq out-file (file-name-sans-extension (file-name-nondirectory file))) (if (plist-get arguments :limit) (progn (let ... ... ...))) (if (eq 0 (apply ... ...)) nil (error "Executing bibtex2html failed")) (and temp-file (delete-file temp-file)) (let ((temp-buffer ...)) (save-current-buffer (set-buffer temp-buffer) (unwind-protect ... ...))) (let ((temp-buffer ...)) (save-current-buffer (set-buffer temp-buffer) (unwind-protect ... ...)))))))((keyword (:standard-properties [18809 18809 nil nil 18881 0 nil planning nil nil nil nil nil nil #<buffer paper.org<2>> nil nil (section (:standard-properties [18809 18809 18809 19270 19270 0 nil section nil nil nil 18809 19270 nil #<buffer paper.org<2>> nil nil (headline ... #6)]) #1 (keyword (:standard-properties [18881 18881 nil nil 18987 1 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil #6] :key "CITE_EXPORT" :value "csl \"/home/ucecesf/synced/share/citation.styles/am...")) (keyword (:standard-properties [19124 19124 nil nil 19160 1 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil #6] :key "LATEX_HEADER" :value "\\usepackage{natbib}")) (keyword (:standard-properties [19216 19216 nil nil 19248 0 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil #6] :key "LATEX_HEADER" :value "\\let\\sc\\scshape")) (keyword (:standard-properties [19248 19248 nil nil 19270 0 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil #6] :key "PRINT_BIBLIOGRAPHY" :value "")))] :key "BIBLIOGRAPHY" :value "/home/ucecesf/s/share/texmf/bibtex/bib/bibliograph...")))
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  mapc(#f(compiled-function (--data) #<bytecode 0x7a5c67fe84383c7>) ((keyword (:standard-properties [18809 18809 nil nil 18881 0 nil planning nil nil nil nil nil nil #<buffer paper.org<2>> nil nil (section (:standard-properties [18809 18809 18809 19270 19270 0 nil section nil nil nil 18809 19270 nil #<buffer paper.org<2>> nil nil ...]) . #2)] :key "BIBLIOGRAPHY" :value "/home/ucecesf/s/share/texmf/bibtex/bib/bibliograph...")) (keyword (:standard-properties [18881 18881 nil nil 18987 1 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil (section (:standard-properties [18809 18809 18809 19270 19270 0 nil section nil nil nil 18809 19270 nil #<buffer paper.org<2>> nil nil ...]) . #2)] :key "CITE_EXPORT" :value "csl \"/home/ucecesf/synced/share/citation.styles/am...")) (keyword (:standard-properties [19124 19124 nil nil 19160 1 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil (section (:standard-properties [18809 18809 18809 19270 19270 0 nil section nil nil nil 18809 19270 nil #<buffer paper.org<2>> nil nil ...]) . #2)] :key "LATEX_HEADER" :value "\\usepackage{natbib}")) (keyword (:standard-properties [19216 19216 nil nil 19248 0 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil (section (:standard-properties [18809 18809 18809 19270 19270 0 nil section nil nil nil 18809 19270 nil #<buffer paper.org<2>> nil nil ...]) . #2)] :key "LATEX_HEADER" :value "\\let\\sc\\scshape")) (keyword (:standard-properties [19248 19248 nil nil 19270 0 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil (section (:standard-properties [18809 18809 18809 19270 19270 0 nil section nil nil nil 18809 19270 nil #<buffer paper.org<2>> nil nil ...]) . #2)] :key "PRINT_BIBLIOGRAPHY" :value ""))))
  #f(compiled-function (--data) #<bytecode 0x7a5c67fe84383c7>)((section (:standard-properties [18809 18809 18809 19270 19270 0 nil section nil nil nil 18809 19270 nil #<buffer paper.org<2>> nil nil (headline (:standard-properties [18796 18796 18809 19270 19270 0 (:title) nil nil nil nil 18811 19268 1 #<buffer paper.org<2>> nil nil (org-data ... ... ... ... ... ... ... #6)] :pre-blank 0 :raw-value [org-element-deferred org-element--headline-raw-value (2 12) nil] :title (#("References" 0 10 ...)) :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :footnote-section-p [org-element-deferred org-element--headline-footnote-section-p nil nil] :archivedp [org-element-deferred org-element--headline-archivedp nil nil] :commentedp nil) #1)]) (keyword (:standard-properties [18809 18809 nil nil 18881 0 nil planning nil nil nil nil nil nil #<buffer paper.org<2>> nil nil #1] :key "BIBLIOGRAPHY" :value "/home/ucecesf/s/share/texmf/bibtex/bib/bibliograph...")) (keyword (:standard-properties [18881 18881 nil nil 18987 1 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil #1] :key "CITE_EXPORT" :value "csl \"/home/ucecesf/synced/share/citation.styles/am...")) (keyword (:standard-properties [19124 19124 nil nil 19160 1 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil #1] :key "LATEX_HEADER" :value "\\usepackage{natbib}")) (keyword (:standard-properties [19216 19216 nil nil 19248 0 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil #1] :key "LATEX_HEADER" :value "\\let\\sc\\scshape")) (keyword (:standard-properties [19248 19248 nil nil 19270 0 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil #1] :key "PRINT_BIBLIOGRAPHY" :value ""))))
  mapc(#f(compiled-function (--data) #<bytecode 0x7a5c67fe84383c7>) ((section (:standard-properties [18809 18809 18809 19270 19270 0 nil section nil nil nil 18809 19270 nil #<buffer paper.org<2>> nil nil (headline (:standard-properties [18796 18796 18809 19270 19270 0 ... nil nil nil nil 18811 19268 1 #<buffer paper.org<2>> nil nil ...] :pre-blank 0 :raw-value [org-element-deferred org-element--headline-raw-value ... nil] :title (...) :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :footnote-section-p [org-element-deferred org-element--headline-footnote-section-p nil nil] :archivedp [org-element-deferred org-element--headline-archivedp nil nil] :commentedp nil) . #2)]) (keyword (:standard-properties [18809 18809 nil nil 18881 0 nil planning nil nil nil nil nil nil #<buffer paper.org<2>> nil nil #3] :key "BIBLIOGRAPHY" :value "/home/ucecesf/s/share/texmf/bibtex/bib/bibliograph...")) (keyword (:standard-properties [18881 18881 nil nil 18987 1 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil #3] :key "CITE_EXPORT" :value "csl \"/home/ucecesf/synced/share/citation.styles/am...")) (keyword (:standard-properties [19124 19124 nil nil 19160 1 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil #3] :key "LATEX_HEADER" :value "\\usepackage{natbib}")) (keyword (:standard-properties [19216 19216 nil nil 19248 0 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil #3] :key "LATEX_HEADER" :value "\\let\\sc\\scshape")) (keyword (:standard-properties [19248 19248 nil nil 19270 0 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil #3] :key "PRINT_BIBLIOGRAPHY" :value "")))))
  #f(compiled-function (--data) #<bytecode 0x7a5c67fe84383c7>)((headline (:standard-properties [18796 18796 18809 19270 19270 0 (:title) nil nil nil nil 18811 19268 1 #<buffer paper.org<2>> nil nil (org-data (:standard-properties [1 1 1 21209 21209 0 nil org-data nil nil nil 3 21209 nil #<buffer paper.org<2>> nil nil nil] :path "/home/ucecesf/s/research/julia/Cocoa/papers/..." :CATEGORY "paper") (section (:standard-properties ...) (keyword ...) (keyword ...) (keyword ...) (keyword ...) (keyword ...) (special-block ... ... ... ... ... ...)) (headline (:standard-properties ... :pre-blank 1 :raw-value ... :title ... :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :footnote-section-p ... :archivedp ... :commentedp nil) (section ... ...)) (headline (:standard-properties ... :pre-blank 0 :raw-value ... :title ... :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :footnote-section-p ... :archivedp ... :commentedp nil) (section ... ... ... ... ... ... ... ... ...) (headline ... ...)) (headline (:standard-properties ... :pre-blank 0 :raw-value ... :title ... :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :footnote-section-p ... :archivedp ... :commentedp nil) (section ... ... ...)) (headline (:standard-properties ... :pre-blank 0 :raw-value ... :title ... :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :footnote-section-p ... :archivedp ... :commentedp nil) (section ... ... ... ... ... ... ... ... ... ... ...)) (headline (:standard-properties ... :pre-blank 0 :raw-value ... :title ... :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :footnote-section-p ... :archivedp ... :commentedp nil) (section ... ... ... ...) (headline ... ...)) #1)] :pre-blank 0 :raw-value [org-element-deferred org-element--headline-raw-value (2 12) nil] :title (#("References" 0 10 (:parent #1))) :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :footnote-section-p [org-element-deferred org-element--headline-footnote-section-p nil nil] :archivedp [org-element-deferred org-element--headline-archivedp nil nil] :commentedp nil) (section (:standard-properties [18809 18809 18809 19270 19270 0 nil section nil nil nil 18809 19270 nil #<buffer paper.org<2>> nil nil #1]) (keyword (:standard-properties [18809 18809 nil nil 18881 0 nil planning nil nil nil nil nil nil #<buffer paper.org<2>> nil nil #4] :key "BIBLIOGRAPHY" :value "/home/ucecesf/s/share/texmf/bibtex/bib/bibli...")) (keyword (:standard-properties [18881 18881 nil nil 18987 1 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil #4] :key "CITE_EXPORT" :value "csl \"/home/ucecesf/synced/share/citation.sty...")) (keyword (:standard-properties [19124 19124 nil nil 19160 1 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil #4] :key "LATEX_HEADER" :value "\\usepackage{natbib}")) (keyword (:standard-properties [19216 19216 nil nil 19248 0 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil #4] :key "LATEX_HEADER" :value "\\let\\sc\\scshape")) (keyword (:standard-properties [19248 19248 nil nil 19270 0 nil nil nil nil nil nil nil nil #<buffer paper.org<2>> nil nil #4] :key "PRINT_BIBLIOGRAPHY" :value "")))))
  mapc(#f(compiled-function (--data) #<bytecode 0x7a5c67fe84383c7>) (... ... ... ... ... ... ...))
  #f(compiled-function (--data) #<bytecode 0x7a5c67fe84383c7>)((org-data (:standard-properties ... :path "/home/ucecesf/s/rese..." :CATEGORY "paper") (section ... ... ... ... ... ... ...) (headline ... ...) (headline ... ... ...) (headline ... ...) (headline ... ...) (headline ... ... ...) (headline ... ...)))
  org-element-ast-map((org-data ... ... ... ... ... ... ... ...) keyword (lambda ... ...) nil nil (bold citation citation-reference code entity export-snippet footnote-reference inline-babel-call inline-src-block italic line-break latex-fragment link macro ...) nil t nil)
  org-element-map((org-data (:standard-properties ... :path "/home/ucecesf/s/rese..." :CATEGORY "paper") (section ... ... ... ... ... ... ...) (headline ... ...) (headline ... ... ...) (headline ... ...) (headline ... ...) (headline ... ... ...) (headline ... ...)) keyword (lambda (keyword) (if ... ...)))
  (progn (progn (setq org-bibtex-html-entries-alist nil) (setq org-bibtex-html-keywords-alist nil)) (org-element-map tree 'keyword #'(lambda (keyword) (if (equal (org-element--property :key keyword nil nil) "BIBLIOGRAPHY") (progn (let (... ... temp-file out-file) (setq file ...) (setq out-file ...) (if ... ...) (if ... nil ...) (and temp-file ...) (let ... ...) (let ... ...)))))))
  (if (org-export-derived-backend-p backend 'ascii 'html) (progn (progn (setq org-bibtex-html-entries-alist nil) (setq org-bibtex-html-keywords-alist nil)) (org-element-map tree 'keyword #'(lambda (keyword) (if (equal (org-element--property :key keyword nil nil) "BIBLIOGRAPHY") (progn (let ... ... ... ... ... ... ... ...)))))))
  org-bibtex-process-bib-files((org-data ... ... ... ... ... ... ... ...) ascii (:export-options nil :back-end ... :translate-alist ... :exported-data #<hash-table eq 0/4001 0x15763426fa49 ...> :input-buffer "paper.org" :input-file "/home/ucecesf/..." :subtitle nil ...))
  org-export-filter-apply-functions((org-ascii-filter-paragraph-spacing org-ascii-filter-comment-spacing org-bibtex-merge-contiguous-citations org-bibtex-process-bib-files) (org-data ... ... ... ... ... ... ... ...) (:export-options nil :back-end ... :translate-alist ... :exported-data #<hash-table eq 0/4001 0x15763426fa49 ...> :input-buffer "paper.org" :input-file "/home/ucecesf/..." :subtitle nil ...))
  org-export--annotate-info(#s(org-export-backend :name ascii :parent nil :transcoders ((bold . org-ascii-bold) (center-block . org-ascii-center-block) (clock . org-ascii-clock) (code . org-ascii-code) (drawer . org-ascii-drawer) (dynamic-block . org-ascii-dynamic-block) (entity . org-ascii-entity) (example-block . org-ascii-example-block) (export-block . org-ascii-export-block) (export-snippet . org-ascii-export-snippet) (fixed-width . org-ascii-fixed-width) (footnote-reference . org-ascii-footnote-reference) (headline . org-ascii-headline) (horizontal-rule . org-ascii-horizontal-rule) (inline-src-block . org-ascii-inline-src-block) (inlinetask . org-ascii-inlinetask) (inner-template . org-ascii-inner-template) (italic . org-ascii-italic) (item . org-ascii-item) (keyword . org-ascii-keyword) (latex-environment . org-ascii-latex-environment) (latex-fragment . org-ascii-latex-fragment) (line-break . org-ascii-line-break) (link . org-ascii-link) (node-property . org-ascii-node-property) (paragraph . org-ascii-paragraph) ...) :options ((:subtitle "SUBTITLE" nil nil parse) (:ascii-bullets nil nil org-ascii-bullets) (:ascii-caption-above nil nil org-ascii-caption-above) (:ascii-charset nil nil org-ascii-charset) (:ascii-global-margin nil nil org-ascii-global-margin) (:ascii-format-drawer-function nil nil org-ascii-format-drawer-function) (:ascii-format-inlinetask-function nil nil org-ascii-format-inlinetask-function) (:ascii-headline-spacing nil nil org-ascii-headline-spacing) (:ascii-indented-line-width nil nil org-ascii-indented-line-width) (:ascii-inlinetask-width nil nil org-ascii-inlinetask-width) (:ascii-inner-margin nil nil org-ascii-inner-margin) (:ascii-links-to-notes nil nil org-ascii-links-to-notes) (:ascii-list-margin nil nil org-ascii-list-margin) (:ascii-paragraph-spacing nil nil org-ascii-paragraph-spacing) (:ascii-quote-margin nil nil org-ascii-quote-margin) (:ascii-table-keep-all-vertical-lines nil nil org-ascii-table-keep-all-vertical-lines) (:ascii-table-use-ascii-art nil nil org-ascii-table-use-ascii-art) (:ascii-table-widen-columns nil nil org-ascii-table-widen-columns) (:ascii-text-width nil nil org-ascii-text-width) (:ascii-underline nil nil org-ascii-underline) (:ascii-verbatim-format nil nil org-ascii-verbatim-format)) :filters ((:filter-headline . org-ascii-filter-headline-blank-lines) (:filter-parse-tree org-ascii-filter-paragraph-spacing org-ascii-filter-comment-spacing) (:filter-section . org-ascii-filter-headline-blank-lines)) :blocks nil :menu (116 "Export to Plain Text" (... ... ... ... ... ...))) (:export-options nil :back-end #s(org-export-backend :name ascii :parent nil :transcoders (... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...) :options (... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...) :filters (... ... ...) :blocks nil :menu (116 "Export to Plain Text" ...)) :translate-alist ((bold . org-ascii-bold) (center-block . org-ascii-center-block) (clock . org-ascii-clock) (code . org-ascii-code) (drawer . org-ascii-drawer) (dynamic-block . org-ascii-dynamic-block) (entity . org-ascii-entity) (example-block . org-ascii-example-block) (export-block . org-ascii-export-block) (export-snippet . org-ascii-export-snippet) (fixed-width . org-ascii-fixed-width) (footnote-reference . org-ascii-footnote-reference) (headline . org-ascii-headline) (horizontal-rule . org-ascii-horizontal-rule) (inline-src-block . org-ascii-inline-src-block) (inlinetask . org-ascii-inlinetask) (inner-template . org-ascii-inner-template) (italic . org-ascii-italic) (item . org-ascii-item) (keyword . org-ascii-keyword) (latex-environment . org-ascii-latex-environment) (latex-fragment . org-ascii-latex-fragment) (line-break . org-ascii-line-break) (link . org-ascii-link) (node-property . org-ascii-node-property) (paragraph . org-ascii-paragraph) ...) :exported-data #<hash-table eq 0/4001 0x15763426fa49 ...> :input-buffer "paper.org" :input-file "/home/ucecesf/s/research/j...") nil nil (:output-file "paper.txt" :ascii-charset ascii))
  org-export-as(ascii nil nil nil (:output-file "paper.txt" :ascii-charset ascii))
  org-export-to-file(ascii "paper.txt" nil nil nil nil (:ascii-charset ascii))
  org-ascii-export-to-ascii(nil nil nil nil (:ascii-charset ascii))
  

[-- Attachment #3: backtrace-odt.txt --]
[-- Type: text/plain, Size: 31142 bytes --]

Debugger entered--Lisp error: (invalid-function org-element-with-buffer-copy)
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  org-element-ast-map((org-data (:standard-properties ... :path "/home/ucecesf/s/rese..." :CATEGORY "paper") (section ... ... ... ... ... ... ...) (headline ... ...) (headline ... ... ...) (headline ... ...) (headline ... ...) (headline ... ... ...) (headline ... ...)) keyword #f(compiled-function (keyword) #<bytecode -0xfeebb6c9ba3d75b>) nil nil (bold citation citation-reference code entity export-snippet footnote-reference inline-babel-call inline-src-block italic line-break latex-fragment link macro radio-target statistics-cookie strike-through subscript superscript table-cell ...) nil t nil)
  org-element-map((org-data ... ... ... ... ... ... ... ...) keyword #f(compiled-function (keyword) #<bytecode -0xfeebb6c9ba3d75b>) (:export-options nil :back-end ... :translate-alist ... :exported-data #<hash-table eq 0/4001 0x157634cb92d9 ...> :input-buffer "paper.org" :input-file "/home/ucecesf/..." :odt-styles-file nil ...))
  org-cite-process-bibliography((:export-options nil :back-end #s(org-export-backend :name odt :parent nil :transcoders ((bold . org-odt-bold) (center-block . org-odt-center-block) (clock . org-odt-clock) (code . org-odt-code) (drawer . org-odt-drawer) (dynamic-block . org-odt-dynamic-block) (entity . org-odt-entity) (example-block . org-odt-example-block) (export-block . org-odt-export-block) (export-snippet . org-odt-export-snippet) (fixed-width . org-odt-fixed-width) (footnote-definition . org-odt-footnote-definition) (footnote-reference . org-odt-footnote-reference) (headline . org-odt-headline) (horizontal-rule . org-odt-horizontal-rule) (inline-src-block . org-odt-inline-src-block) (inlinetask . org-odt-inlinetask) (italic . org-odt-italic) (item . org-odt-item) (keyword . org-odt-keyword) (latex-environment . org-odt-latex-environment) (latex-fragment . org-odt-latex-fragment) (line-break . org-odt-line-break) (link . org-odt-link) (node-property . org-odt-node-property) (paragraph . org-odt-paragraph) (plain-list . org-odt-plain-list) (plain-text . org-odt-plain-text) (planning . org-odt-planning) (property-drawer . org-odt-property-drawer) (quote-block . org-odt-quote-block) (radio-target . org-odt-radio-target) (section . org-odt-section) (special-block . org-odt-special-block) (src-block . org-odt-src-block) (statistics-cookie . org-odt-statistics-cookie) (strike-through . org-odt-strike-through) (subscript . org-odt-subscript) ...) :options ((:odt-styles-file "ODT_STYLES_FILE" nil org-odt-styles-file t) (:description "DESCRIPTION" nil nil newline) (:keywords "KEYWORDS" nil nil space) (:subtitle "SUBTITLE" nil nil parse) (:odt-content-template-file nil nil org-odt-content-template-file) (:odt-display-outline-level nil nil org-odt-display-outline-level) (:odt-fontify-srcblocks nil nil org-odt-fontify-srcblocks) (:odt-format-drawer-function nil nil org-odt-format-drawer-function) (:odt-format-headline-function nil nil org-odt-format-headline-function) (:odt-format-inlinetask-function nil nil org-odt-format-inlinetask-function) (:odt-inline-formula-rules nil nil org-odt-inline-formula-rules) (:odt-inline-image-rules nil nil org-odt-inline-image-rules) (:odt-pixels-per-inch nil nil org-odt-pixels-per-inch) (:odt-table-styles nil nil org-odt-table-styles) (:odt-use-date-fields nil nil org-odt-use-date-fields) (:with-latex nil "tex" org-odt-with-latex) (:latex-header "LATEX_HEADER" nil nil newline)) :filters ((:filter-parse-tree org-odt--translate-latex-fragments org-odt--translate-description-lists org-odt--translate-list-tables org-odt--translate-image-links)) :blocks nil :menu (111 "Export to ODT" ((111 "As ODT file" org-odt-export-to-odt) (79 "As ODT file and open" ...)))) :translate-alist ((bold . org-odt-bold) (center-block . org-odt-center-block) (clock . org-odt-clock) (code . org-odt-code) (drawer . org-odt-drawer) (dynamic-block . org-odt-dynamic-block) (entity . org-odt-entity) (example-block . org-odt-example-block) (export-block . org-odt-export-block) (export-snippet . org-odt-export-snippet) (fixed-width . org-odt-fixed-width) (footnote-definition . org-odt-footnote-definition) (footnote-reference . org-odt-footnote-reference) (headline . org-odt-headline) (horizontal-rule . org-odt-horizontal-rule) (inline-src-block . org-odt-inline-src-block) (inlinetask . org-odt-inlinetask) (italic . org-odt-italic) (item . org-odt-item) (keyword . org-odt-keyword) (latex-environment . org-odt-latex-environment) (latex-fragment . org-odt-latex-fragment) (line-break . org-odt-line-break) (link . org-odt-link) (node-property . org-odt-node-property) (paragraph . org-odt-paragraph) (plain-list . org-odt-plain-list) (plain-text . org-odt-plain-text) (planning . org-odt-planning) (property-drawer . org-odt-property-drawer) (quote-block . org-odt-quote-block) (radio-target . org-odt-radio-target) (section . org-odt-section) (special-block . org-odt-special-block) (src-block . org-odt-src-block) (statistics-cookie . org-odt-statistics-cookie) (strike-through . org-odt-strike-through) (subscript . org-odt-subscript) ...) :exported-data #<hash-table eq 0/4001 0x157634cb92d9 ...> :input-buffer "paper.org" :input-file "/home/ucecesf/s/research/julia/Cocoa/p..." :odt-styles-file nil :description nil :keywords nil :subtitle nil :odt-content-template-file nil :odt-display-outline-level 2 :odt-fontify-srcblocks t :odt-format-drawer-function (lambda (name contents) (cond ((string= name "todo") (format "<text:p text:style-name=\"Text_20_body\"..." contents)) (t contents))) :odt-format-headline-function org-odt-format-headline-default-function :odt-format-inlinetask-function org-odt-format-inlinetask-default-function :odt-inline-formula-rules (("file" . "\\.\\(mathml\\|mml\\|odf\\)\\'")) :odt-inline-image-rules (("file" . "\\(?:\\.\\(?:gif\\|\\(?:jpe?\\|pn\\|sv\\)g\\)\\)")) :odt-pixels-per-inch 96.0 ...))
  org-export--annotate-info(#s(org-export-backend :name odt :parent nil :transcoders ((bold . org-odt-bold) (center-block . org-odt-center-block) (clock . org-odt-clock) (code . org-odt-code) (drawer . org-odt-drawer) (dynamic-block . org-odt-dynamic-block) (entity . org-odt-entity) (example-block . org-odt-example-block) (export-block . org-odt-export-block) (export-snippet . org-odt-export-snippet) (fixed-width . org-odt-fixed-width) (footnote-definition . org-odt-footnote-definition) (footnote-reference . org-odt-footnote-reference) (headline . org-odt-headline) (horizontal-rule . org-odt-horizontal-rule) (inline-src-block . org-odt-inline-src-block) (inlinetask . org-odt-inlinetask) (italic . org-odt-italic) (item . org-odt-item) (keyword . org-odt-keyword) (latex-environment . org-odt-latex-environment) (latex-fragment . org-odt-latex-fragment) (line-break . org-odt-line-break) (link . org-odt-link) (node-property . org-odt-node-property) (paragraph . org-odt-paragraph) ...) :options ((:odt-styles-file "ODT_STYLES_FILE" nil org-odt-styles-file t) (:description "DESCRIPTION" nil nil newline) (:keywords "KEYWORDS" nil nil space) (:subtitle "SUBTITLE" nil nil parse) (:odt-content-template-file nil nil org-odt-content-template-file) (:odt-display-outline-level nil nil org-odt-display-outline-level) (:odt-fontify-srcblocks nil nil org-odt-fontify-srcblocks) (:odt-format-drawer-function nil nil org-odt-format-drawer-function) (:odt-format-headline-function nil nil org-odt-format-headline-function) (:odt-format-inlinetask-function nil nil org-odt-format-inlinetask-function) (:odt-inline-formula-rules nil nil org-odt-inline-formula-rules) (:odt-inline-image-rules nil nil org-odt-inline-image-rules) (:odt-pixels-per-inch nil nil org-odt-pixels-per-inch) (:odt-table-styles nil nil org-odt-table-styles) (:odt-use-date-fields nil nil org-odt-use-date-fields) (:with-latex nil "tex" org-odt-with-latex) (:latex-header "LATEX_HEADER" nil nil newline)) :filters ((:filter-parse-tree org-odt--translate-latex-fragments org-odt--translate-description-lists org-odt--translate-list-tables org-odt--translate-image-links)) :blocks nil :menu (111 "Export to ODT" (... ...))) (:export-options nil :back-end #s(org-export-backend :name odt :parent nil :transcoders (... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...) :options (... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...) :filters (...) :blocks nil :menu (111 "Export to ODT" ...)) :translate-alist ((bold . org-odt-bold) (center-block . org-odt-center-block) (clock . org-odt-clock) (code . org-odt-code) (drawer . org-odt-drawer) (dynamic-block . org-odt-dynamic-block) (entity . org-odt-entity) (example-block . org-odt-example-block) (export-block . org-odt-export-block) (export-snippet . org-odt-export-snippet) (fixed-width . org-odt-fixed-width) (footnote-definition . org-odt-footnote-definition) (footnote-reference . org-odt-footnote-reference) (headline . org-odt-headline) (horizontal-rule . org-odt-horizontal-rule) (inline-src-block . org-odt-inline-src-block) (inlinetask . org-odt-inlinetask) (italic . org-odt-italic) (item . org-odt-item) (keyword . org-odt-keyword) (latex-environment . org-odt-latex-environment) (latex-fragment . org-odt-latex-fragment) (line-break . org-odt-line-break) (link . org-odt-link) (node-property . org-odt-node-property) (paragraph . org-odt-paragraph) ...) :exported-data #<hash-table eq 0/4001 0x157634cb92d9 ...> :input-buffer "paper.org" :input-file "/home/ucecesf/s/research/j...") nil nil nil)
  org-export-as(odt nil nil nil nil)
  org-odt-export-to-odt(nil nil nil nil)
  org-export-dispatch(nil)
  funcall-interactively(org-export-dispatch nil)
  command-execute(org-export-dispatch)

Re: strange error exporting to ascii

[William Denton]

On Thursday, December 21st, 2023 at 10:44, Fraga, Eric <e.fraga@ucl.ac.uk> wrote:

> So, long story short, I try to export the original document to ascii and
> I get an error related to citations. Having seen some updates to
> exporting citations on the list over the past few weeks, I figured I
> should upgrade org to the latest version. Now exporting to LaTeX still
> works just fine but exporting to ascii still does not work (with the
> same error: see backtrace-ascii.txt attached) and exporting to ODT now
> no longer works (see backtrace-odt.txt).

I've been doing a lot of exporting to various formats lately, testing out basic and CSL citations, and ran into a few bugs but not what you're showing.  And nothing about ODT was touched, IIRC. Could you try narrowing down to citations only, and commenting out one by one until it works?  


Bill

--
William Denton
https://www.miskatonic.org/
Librarian, artist and licensed private investigator.
Toronto, Canada

Re: strange error exporting to ascii

[Ihor Radchenko]

"Fraga, Eric" <e.fraga@ucl.ac.uk> writes:

> So, long story short, I try to export the original document to ascii and
> I get an error related to citations.  Having seen some updates to
> exporting citations on the list over the past few weeks, I figured I
> should upgrade org to the latest version.  Now exporting to LaTeX still
> works just fine but exporting to ascii still does not work (with the
> same error: see backtrace-ascii.txt attached) *and* exporting to ODT now
> no longer works (see backtrace-odt.txt).
>
> Any suggestions?  I have not tried emacs -Q because that is non-trivial
> due to my configuration but will do so if nothing obvious jumps out to
> anybody.

Looks like your #+bibliography does not follow

#+BIBLIOGRAPHY: /home/user/Literature/foo.bib plain option:-d

format.

-- 
Ihor Radchenko // yantar92,
Org mode contributor,
Learn more about Org mode at <https://orgmode.org/>.
Support Org development at <https://liberapay.com/org-mode>,
or support my work at <https://liberapay.com/yantar92>

Re: strange error exporting to ascii

[Fraga, Eric]

Hi Ihor,

thank you for the response.

On Friday, 22 Dec 2023 at 13:53, Ihor Radchenko wrote:
> Looks like your #+bibliography does not follow
>
> #+BIBLIOGRAPHY: /home/user/Literature/foo.bib plain option:-d
>
> format.

It does not but the documentation does not say anything about a format
at all like this.  What are the two items following the bib file?

I do have
#+cite_export: csl "/somepath/style.csl"
as well as a BIBLIOGRAPHY entry with just a file name.

In any case, I modified the bibliography line and it then complained
about no bibtex2html (which didn't seem to be needed before?).  I
installed that package and now the export complains about that command
failing.  I seem to be going down a rabbit hole.

Thanks again,
eric

-- 
: Eric S Fraga, with org release_9.6.8-771-gdf0539 in Emacs 30.0.50

Re: strange error exporting to ascii

[Ihor Radchenko]

"Fraga, Eric" <e.fraga@ucl.ac.uk> writes:

> On Friday, 22 Dec 2023 at 13:53, Ihor Radchenko wrote:
>> Looks like your #+bibliography does not follow
>>
>> #+BIBLIOGRAPHY: /home/user/Literature/foo.bib plain option:-d
>>
>> format.
>
> It does not but the documentation does not say anything about a format
> at all like this.  What are the two items following the bib file?

I have no clue. The error you are seeing is coming from
`org-bibtex-process-bib-files', which is not a part of Org mode - it is
defined in ox-bibtex.el from org-contrib (unmaintained!!!).

> I do have
> #+cite_export: csl "/somepath/style.csl"
> as well as a BIBLIOGRAPHY entry with just a file name.
>
> In any case, I modified the bibliography line and it then complained
> about no bibtex2html (which didn't seem to be needed before?).  I
> installed that package and now the export complains about that command
> failing.  I seem to be going down a rabbit hole.

This is also something from ox-bibtex.el. I suspect that you do not need
ox-bibtex.el. It is an old library predating Org's native citation support.

Also, merely loading ox-bibtex.el changes Org export behaviour. Be careful.

-- 
Ihor Radchenko // yantar92,
Org mode contributor,
Learn more about Org mode at <https://orgmode.org/>.
Support Org development at <https://liberapay.com/org-mode>,
or support my work at <https://liberapay.com/yantar92>

Re: strange error exporting to ascii

[Fraga, Eric]

On Friday, 22 Dec 2023 at 15:14, Ihor Radchenko wrote:

[...]

> This is also something from ox-bibtex.el. I suspect that you do not need
> ox-bibtex.el. It is an old library predating Org's native citation support.
>
> Also, merely loading ox-bibtex.el changes Org export behaviour. Be careful.

Ah!  Interesting.  I had forgotten about requiring ox-bibtex in my
configuration files.  I've now removed it but now get a new error
(elided):

Debugger entered--Lisp error: (invalid-function org-element-with-buffer-copy)
  org-element-with-buffer-copy(:to-buffer #<buffer  *Org parse*> :drop-contents t :drop-visibility t :drop-narrowing t :drop-locals t nil nil [...])
  org-cite-parse-elements("Alba, E.; Tomassini, M. [[https://doi.org/10.1109/...")
  org-cite-csl-render-bibliography([...])

for both exports to ascii and odt, although slightly different text in
the org-cite-parse-elements function.

Export to LaTeX continues to work.

-- 
: Eric S Fraga, with org release_9.6.8-771-gdf0539 in Emacs 30.0.50

Re: strange error exporting to ascii

[Ihor Radchenko]

"Fraga, Eric" <e.fraga@ucl.ac.uk> writes:

> Ah!  Interesting.  I had forgotten about requiring ox-bibtex in my
> configuration files.  I've now removed it but now get a new error
> (elided):
>
> Debugger entered--Lisp error: (invalid-function org-element-with-buffer-copy)
>   org-element-with-buffer-copy(:to-buffer #<buffer  *Org parse*> :drop-contents t :drop-visibility t :drop-narrowing t :drop-locals t nil nil [...])
>   org-cite-parse-elements("Alba, E.; Tomassini, M. [[https://doi.org/10.1109/...")
>   org-cite-csl-render-bibliography([...])

This is a problem with Org mode compilation. Try to reinstall.

-- 
Ihor Radchenko // yantar92,
Org mode contributor,
Learn more about Org mode at <https://orgmode.org/>.
Support Org development at <https://liberapay.com/org-mode>,
or support my work at <https://liberapay.com/yantar92>

Re: strange error exporting to ascii

[Fraga, Eric]

On Friday, 22 Dec 2023 at 15:58, Ihor Radchenko wrote:
> This is a problem with Org mode compilation. Try to reinstall.

Problem persists.  I've done

make update

restart emacs: fails to export.  Then

make cleanall
make

and restart emacs but also fails to export, both times with same error
message:

 Debugger entered--Lisp error: (invalid-function org-element-with-buffer-copy)
  org-element-with-buffer-copy([...])
  org-cite-parse-elements("Alba, E.; Tomassini, M. [[https://doi.org/10.1109/...")
  org-cite-csl-render-bibliography([...])
  org-cite-export-bibliography([...])


Extra data point: using older version of org (on a different computer),
having removed ox-bibtex requirement, is able to export to both ascii
and odt.

-- 
: Eric S Fraga, with org release_9.6.13-1003-g872c1b in Emacs 30.0.50

Re: strange error exporting to ascii

[Fraga, Eric]

Another data point: if I do a

make cleanall

and then start emacs without org compiled, exporting (to both targets)
works, although there are complaints initially about the autoload file
not being present etc.

Slow, mind you. ;-) But I can live with this in the short term so I can
get my work done!

So there seems to be some compilation bug maybe?  I will build Emacs
from git as the version I'm using was built in September (I don't update
during term time as I depend on Emacs and org for my teaching).  I'll
report back after doing so.

Thank you for helping me out.

-- 
: Eric S Fraga, with org release_9.6.7-13-g99cc96 in Emacs 30.0.50

Re: strange error exporting to ascii

[Ihor Radchenko]

"Fraga, Eric" <e.fraga@ucl.ac.uk> writes:

> So there seems to be some compilation bug maybe?  I will build Emacs
> from git as the version I'm using was built in September (I don't update
> during term time as I depend on Emacs and org for my teaching).  I'll
> report back after doing so.

This is most likely a bug with internal dependencies.
I need some time to figure out how to approach it.

-- 
Ihor Radchenko // yantar92,
Org mode contributor,
Learn more about Org mode at <https://orgmode.org/>.
Support Org development at <https://liberapay.com/org-mode>,
or support my work at <https://liberapay.com/yantar92>

Re: strange error exporting to ascii

[Fraga, Eric]

On Friday, 22 Dec 2023 at 16:36, Ihor Radchenko wrote:
>
> This is most likely a bug with internal dependencies.
> I need some time to figure out how to approach it.

Okay, thank you.

For the record, I've re-built Emacs from git and the problem persists so
it's not (necessarily) Emacs itself.

And no rush, by the way: I have a working solution which is what
matters!

Thanks again,
eric

-- 
: Eric S Fraga, with org release_9.6.13-1003-g872c1b in Emacs 30.0.50

Re: strange error exporting to ascii

[Ihor Radchenko]

Ihor Radchenko <yantar92@posteo.net> writes:

> This is most likely a bug with internal dependencies.
> I need some time to figure out how to approach it.

... me adding one innocent require to ox.el

       https://youtu.be/OpLU__bhu2w?t=237 _____//||||||||💣

-- 
Ihor Radchenko // yantar92,
Org mode contributor,
Learn more about Org mode at <https://orgmode.org/>.
Support Org development at <https://liberapay.com/org-mode>,
or support my work at <https://liberapay.com/yantar92>

Re: strange error exporting to ascii

[Fraga, Eric]

On Saturday, 23 Dec 2023 at 09:52, Ihor Radchenko wrote:
> ... me adding one innocent require to ox.el

Complex systems... :-)

Fantastic video, by the way.

-- 
: Eric S Fraga, with org release_9.6.13-1003-g872c1b in Emacs 30.0.50

Re: strange error exporting to ascii

[Ihor Radchenko]

Ihor Radchenko <yantar92@posteo.net> writes:

> "Fraga, Eric" <e.fraga@ucl.ac.uk> writes:
>
>> So there seems to be some compilation bug maybe?  I will build Emacs
>> from git as the version I'm using was built in September (I don't update
>> during term time as I depend on Emacs and org for my teaching).  I'll
>> report back after doing so.
>
> This is most likely a bug with internal dependencies.
> I need some time to figure out how to approach it.

Should work now. I reverted the problematic commit.
https://git.savannah.gnu.org/cgit/emacs/org-mode.git/commit/?id=cee9b6abc

-- 
Ihor Radchenko // yantar92,
Org mode contributor,
Learn more about Org mode at <https://orgmode.org/>.
Support Org development at <https://liberapay.com/org-mode>,
or support my work at <https://liberapay.com/yantar92>

Re: strange error exporting to ascii

[Fraga, Eric]

On Sunday, 24 Dec 2023 at 11:20, Ihor Radchenko wrote:
> Should work now. I reverted the problematic commit.

Confirmed.  Thank you!

-- 
: Eric S Fraga, with org release_9.6.13-1003-g872c1b in Emacs 30.0.50