I was trying to debug a reproducibility test failure on muse-el in
Debian Salsa CI reprotest[1].  It looks like that the contents of the
generated autoload file depends on the input sequence of files and
directories, and it looks like the `loaddefs-generate' doesn't enforce
such a sequence to be consistent.

I have provided a patch (attached) to sort the input directories and
files in an attempt to fix this reproducibility issue.  I have tested
with locally muse-el (actually patched to use `loaddefs-generate'
instead of `batch-update-autoloads', but that's a separate issue which
I'll file a separate bug.)

PTAL.  TIA!

[1] https://salsa.debian.org/emacsen-team/muse-el/-/jobs/6417218


In GNU Emacs 29.4 (build 1, x86_64-pc-linux-gnu, GTK+ Version 3.24.38,
 cairo version 1.16.0) of 2024-07-02, modified by Debian built on
 debian-hx90
System Description: Debian GNU/Linux 12 (bookworm)

Configured using:
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Configured features:
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JSON LCMS2 LIBOTF LIBSELINUX LIBSYSTEMD LIBXML2 M17N_FLT MODULES
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THREADS TIFF TOOLKIT_SCROLL_BARS TREE_SITTER WEBP X11 XDBE XIM XINPUT2
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Important settings:
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Major mode: notmuch-hello

Minor modes in effect:
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/usr/share/emacs/site-lisp/elpa/treemacs-projectile-3.1/treemacs-projectile-pkg hides /usr/share/emacs/site-lisp/elpa-src/treemacs-projectile-3.1/treemacs-projectile-pkg
/usr/share/emacs/site-lisp/elpa/treemacs-projectile-3.1/treemacs-projectile-autoloads hides /usr/share/emacs/site-lisp/elpa-src/treemacs-projectile-3.1/treemacs-projectile-autoloads
/usr/share/emacs/site-lisp/elpa/treemacs-projectile-3.1/treemacs-projectile hides /usr/share/emacs/site-lisp/elpa-src/treemacs-projectile-3.1/treemacs-projectile
/usr/share/emacs/site-lisp/elpa/vterm-0.0.2/vterm-load-path hides /usr/share/emacs/site-lisp/elpa-src/vterm-0.0.2/vterm-load-path
/usr/share/emacs/site-lisp/elpa/vterm-0.0.2/vterm hides /usr/share/emacs/site-lisp/elpa-src/vterm-0.0.2/vterm
/usr/share/emacs/site-lisp/elpa/vterm-0.0.2/vterm-pkg hides /usr/share/emacs/site-lisp/elpa-src/vterm-0.0.2/vterm-pkg
/usr/share/emacs/site-lisp/elpa/vterm-0.0.2/vterm-autoloads hides /usr/share/emacs/site-lisp/elpa-src/vterm-0.0.2/vterm-autoloads
/usr/share/emacs/site-lisp/elpa/web-mode-17.3.13/web-mode-pkg hides /usr/share/emacs/site-lisp/elpa-src/web-mode-17.3.13/web-mode-pkg
/usr/share/emacs/site-lisp/elpa/web-mode-17.3.13/web-mode-autoloads hides /usr/share/emacs/site-lisp/elpa-src/web-mode-17.3.13/web-mode-autoloads
/usr/share/emacs/site-lisp/elpa/web-mode-17.3.13/web-mode hides /usr/share/emacs/site-lisp/elpa-src/web-mode-17.3.13/web-mode
/usr/share/emacs/site-lisp/elpa/with-editor-3.3.2/with-editor-pkg hides /usr/share/emacs/site-lisp/elpa-src/with-editor-3.3.2/with-editor-pkg
/usr/share/emacs/site-lisp/elpa/with-editor-3.3.2/with-editor-autoloads hides /usr/share/emacs/site-lisp/elpa-src/with-editor-3.3.2/with-editor-autoloads
/usr/share/emacs/site-lisp/elpa/with-editor-3.3.2/with-editor hides /usr/share/emacs/site-lisp/elpa-src/with-editor-3.3.2/with-editor
/usr/share/emacs/site-lisp/elpa/xml-rpc-1.6.17/xml-rpc hides /usr/share/emacs/site-lisp/elpa-src/xml-rpc-1.6.17/xml-rpc
/usr/share/emacs/site-lisp/elpa/xml-rpc-1.6.17/xml-rpc-pkg hides /usr/share/emacs/site-lisp/elpa-src/xml-rpc-1.6.17/xml-rpc-pkg
/usr/share/emacs/site-lisp/elpa/xml-rpc-1.6.17/xml-rpc-autoloads hides /usr/share/emacs/site-lisp/elpa-src/xml-rpc-1.6.17/xml-rpc-autoloads
/usr/share/emacs/site-lisp/elpa/yaml-mode-0.0.16/yaml-mode-pkg hides /usr/share/emacs/site-lisp/elpa-src/yaml-mode-0.0.16/yaml-mode-pkg
/usr/share/emacs/site-lisp/elpa/yaml-mode-0.0.16/yaml-mode hides /usr/share/emacs/site-lisp/elpa-src/yaml-mode-0.0.16/yaml-mode
/usr/share/emacs/site-lisp/elpa/yaml-mode-0.0.16/yaml-mode-autoloads hides /usr/share/emacs/site-lisp/elpa-src/yaml-mode-0.0.16/yaml-mode-autoloads
/usr/share/emacs/site-lisp/elpa/yasnippet-0.14.1/yasnippet-autoloads hides /usr/share/emacs/site-lisp/elpa-src/yasnippet-0.14.1/yasnippet-autoloads
/usr/share/emacs/site-lisp/elpa/yasnippet-0.14.1/yasnippet-pkg hides /usr/share/emacs/site-lisp/elpa-src/yasnippet-0.14.1/yasnippet-pkg
/usr/share/emacs/site-lisp/elpa/yasnippet-0.14.1/yasnippet hides /usr/share/emacs/site-lisp/elpa-src/yasnippet-0.14.1/yasnippet
/usr/share/emacs/site-lisp/elpa/yasnippet-snippets-20220713/yasnippet-snippets hides /usr/share/emacs/site-lisp/elpa-src/yasnippet-snippets-20220713/yasnippet-snippets
/usr/share/emacs/site-lisp/elpa/yasnippet-snippets-20220713/yasnippet-snippets-pkg hides /usr/share/emacs/site-lisp/elpa-src/yasnippet-snippets-20220713/yasnippet-snippets-pkg
/usr/share/emacs/site-lisp/elpa/yasnippet-snippets-20220713/yasnippet-snippets-autoloads hides /usr/share/emacs/site-lisp/elpa-src/yasnippet-snippets-20220713/yasnippet-snippets-autoloads
/usr/share/emacs/site-lisp/elpa/zenburn-theme-2.8.0/zenburn-theme hides /usr/share/emacs/site-lisp/elpa-src/zenburn-theme-2.8.0/zenburn-theme
/usr/share/emacs/site-lisp/elpa/zenburn-theme-2.8.0/zenburn-theme-pkg hides /usr/share/emacs/site-lisp/elpa-src/zenburn-theme-2.8.0/zenburn-theme-pkg
/usr/share/emacs/site-lisp/elpa/zenburn-theme-2.8.0/zenburn-theme-autoloads hides /usr/share/emacs/site-lisp/elpa-src/zenburn-theme-2.8.0/zenburn-theme-autoloads
/usr/share/emacs/site-lisp/elpa/seq-2.24/seq hides /usr/share/emacs/29.4/lisp/emacs-lisp/seq

Features:
(shadow emacsbug facemenu two-column org-clock dired-aux org-element
org-persist org-id org-refile oc-basic ol-eww eww xdg mm-url ol-rmail
ol-mhe ol-irc ol-info ol-gnus nnselect gnus-art mm-uu gnus-sum
gnus-group gnus-undo gnus-start gnus-dbus dbus gnus-cloud nnimap nnmail
mail-source utf7 nnoo gnus-spec gnus-int gnus-range gnus-win ol-docview
doc-view image-mode exif ol-bibtex bibtex ol-bbdb ol-w3m ol-doi
org-link-doi org ob ob-tangle ob-ref ob-lob ob-table ob-exp org-macro
org-src ob-comint org-pcomplete org-list org-footnote org-faces
org-entities noutline outline ob-emacs-lisp ob-core ob-eval org-cycle
org-table ol org-fold org-fold-core org-keys oc org-loaddefs org-version
org-compat org-macs url-cache mailalias gnus nnheader range mml2015 qp
sort mail-extr mm-archive shr-color textsec uni-scripts idna-mapping
ucs-normalize uni-confusable textsec-check magit-extras face-remap
magit-bookmark magit-submodule magit-obsolete magit-blame magit-stash
magit-reflog magit-bisect magit-push magit-pull magit-fetch magit-clone
magit-remote magit-commit magit-sequence magit-notes magit-worktree
magit-tag magit-merge magit-branch magit-reset magit-files magit-refs
magit-status magit magit-repos magit-apply magit-wip magit-log
which-func magit-diff smerge-mode diff git-commit log-edit add-log
magit-core magit-autorevert magit-margin magit-transient magit-process
with-editor shell pcomplete compat compat-30 magit-mode transient
magit-git magit-section magit-utils ace-window avy eglot
external-completion array jsonrpc ert ewoc debug backtrace find-func
imenu jka-compr mule-util misearch multi-isearch notmuch notmuch-tree
notmuch-jump notmuch-hello notmuch-show notmuch-print notmuch-crypto
notmuch-mua notmuch-message notmuch-draft notmuch-maildir-fcc
notmuch-address notmuch-company notmuch-parser format-spec notmuch-wash
coolj goto-addr icalendar diary-lib diary-loaddefs cal-menu calendar
cal-loaddefs notmuch-tag crm notmuch-lib notmuch-version notmuch-compat
mm-view mml-smime smime dig elfeed-show elfeed-search message yank-media
rfc822 mml mml-sec gnus-util mm-decode mm-bodies mm-encode mailabbrev
gmm-utils mailheader shr pixel-fill kinsoku svg dom elfeed-csv elfeed
elfeed-curl elfeed-log elfeed-db elfeed-lib avl-tree url-queue url-file
xml-query xml matlab matlab-scan matlab-syntax matlab-compat flyspell
ispell gnutls network-stream epa-file epa derived rcirc parse-time
iso8601 time-date term/xterm xterm comp comp-cstr server cap-words
superword subword vc-hg vc-git diff-mode vc-bzr vc-src vc-sccs vc-svn
vc-cvs vc-rcs log-view pcvs-util vc vc-dispatcher bug-reference
disp-table whitespace yasnippet-snippets yasnippet cus-edit cus-start
wid-edit company-oddmuse company-keywords company-etags etags fileloop
generator xref company-gtags company-dabbrev-code company-dabbrev
company-files company-clang company-capf company-cmake company-semantic
company-template company-bbdb company init zenburn-theme xclip
treesit-auto treesit treemacs-project-follow-mode treemacs-follow-mode
treemacs-rendering treemacs-annotations treemacs-async treemacs-visuals
treemacs-fringe-indicator pulse color treemacs-workspaces treemacs-dom
treemacs-icons treemacs-themes treemacs-scope treemacs-core-utils
treemacs-logging treemacs-customization pfuture inline ht s hl-line dash
auth-source-xoauth2-plugin pcase smtpmail sendmail mail-utils oauth2
url-http url-auth mail-parse rfc2231 rfc2047 rfc2045 mm-util ietf-drums
mail-prsvr url-gw nsm puny plstore epg rfc6068 epg-config
keychain-environment exec-path-from-shell activities-tabs activities
persist bookmark pp edmacro kmacro advice icomplete cus-load
flymake-proc flymake project compile text-property-search comint
ansi-osc ansi-color ring warnings icons thingatpt cl-extra help-mode
use-package use-package-ensure use-package-delight use-package-diminish
use-package-bind-key bind-key easy-mmode use-package-core
display-line-numbers autorevert filenotify
keychain-environment-autoloads treesit-auto-autoloads xclip-autoloads rx
info debian-el dired dired-loaddefs finder-inf package browse-url url
url-proxy url-privacy url-expand url-methods url-history url-cookie
generate-lisp-file url-domsuf url-util mailcap url-handlers url-parse
auth-source cl-seq eieio eieio-core cl-macs password-cache json subr-x
map byte-opt gv bytecomp byte-compile url-vars cl-loaddefs cl-lib rmc
iso-transl tooltip cconv eldoc paren electric uniquify ediff-hook
vc-hooks lisp-float-type elisp-mode mwheel term/x-win x-win
term/common-win x-dnd tool-bar dnd fontset image regexp-opt fringe
tabulated-list replace newcomment text-mode lisp-mode prog-mode register
page tab-bar menu-bar rfn-eshadow isearch easymenu timer select
scroll-bar mouse jit-lock font-lock syntax font-core term/tty-colors
frame minibuffer nadvice seq simple cl-generic indonesian philippine
cham georgian utf-8-lang misc-lang vietnamese tibetan thai tai-viet lao
korean japanese eucjp-ms cp51932 hebrew greek romanian slovak czech
european ethiopic indian cyrillic chinese composite emoji-zwj charscript
charprop case-table epa-hook jka-cmpr-hook help abbrev obarray oclosure
cl-preloaded button loaddefs theme-loaddefs faces cus-face macroexp
files window text-properties overlay sha1 md5 base64 format env
code-pages mule custom widget keymap hashtable-print-readable backquote
threads dbusbind inotify lcms2 dynamic-setting system-font-setting
font-render-setting cairo move-toolbar gtk x-toolkit xinput2 x multi-tty
make-network-process native-compile emacs)

Memory information:
((conses 16 1749042 98753)
 (symbols 48 41413 35)
 (strings 32 199276 36386)
 (string-bytes 1 5946508)
 (vectors 16 110776)
 (vector-slots 8 2671869 226098)
 (floats 8 2031 2419)
 (intervals 56 86626 1652)
 (buffers 984 44))

-- 
Regards,
Xiyue Deng