* conditional export based on babel result
@ 2012-09-05 12:36 Andreas Leha
2012-09-05 16:09 ` Thomas S. Dye
2012-09-05 18:08 ` Eric Schulte
0 siblings, 2 replies; 6+ messages in thread
From: Andreas Leha @ 2012-09-05 12:36 UTC (permalink / raw
To: emacs-orgmode
Hi all,
is there a possibility to exclude (or include) parts of the document
based on some babel source block result?
First some use case:
Say, I am doing a statistical test. And only if the test turns out to be
significant, a follow-up analysis is carried out.
Is that possible?
One thinkable and ugly option would be to allow lisp-generated tags like
in this dummy example:
#+begin_org
* The Test
#+name: sometest
#+begin_src R
test_result <- 0.03
#+end_src
** export maybe (if (< (string-to-number (sbe sometest)) 0.05) ":export:" ":noexport:")
The follow-up
#+end_org
Regards,
Andreas
^ permalink raw reply [flat|nested] 6+ messages in thread
* Re: conditional export based on babel result
2012-09-05 12:36 conditional export based on babel result Andreas Leha
@ 2012-09-05 16:09 ` Thomas S. Dye
2012-09-05 18:57 ` Andreas Leha
2012-09-05 18:08 ` Eric Schulte
1 sibling, 1 reply; 6+ messages in thread
From: Thomas S. Dye @ 2012-09-05 16:09 UTC (permalink / raw
To: Andreas Leha; +Cc: emacs-orgmode
Hi Andreas,
Perhaps you could generate the conditional parts of the document from
source code blocks? Pass in your test result and either export "" or
#+begin_latex ... #+end_latex?
All the best,
Tom
Andreas Leha <andreas.leha@med.uni-goettingen.de> writes:
> Hi all,
>
> is there a possibility to exclude (or include) parts of the document
> based on some babel source block result?
>
> First some use case:
> Say, I am doing a statistical test. And only if the test turns out to be
> significant, a follow-up analysis is carried out.
>
> Is that possible?
>
> One thinkable and ugly option would be to allow lisp-generated tags like
> in this dummy example:
>
> #+begin_org
>
> * The Test
> #+name: sometest
> #+begin_src R
> test_result <- 0.03
> #+end_src
>
>
> ** export maybe (if (< (string-to-number (sbe sometest)) 0.05)
> ":export:" ":noexport:")
> The follow-up
>
> #+end_org
>
>
> Regards,
> Andreas
>
>
>
--
Thomas S. Dye
http://www.tsdye.com
^ permalink raw reply [flat|nested] 6+ messages in thread
* Re: conditional export based on babel result
2012-09-05 12:36 conditional export based on babel result Andreas Leha
2012-09-05 16:09 ` Thomas S. Dye
@ 2012-09-05 18:08 ` Eric Schulte
2012-09-05 19:04 ` Andreas Leha
1 sibling, 1 reply; 6+ messages in thread
From: Eric Schulte @ 2012-09-05 18:08 UTC (permalink / raw
To: Andreas Leha; +Cc: emacs-orgmode
Andreas Leha <andreas.leha@med.uni-goettingen.de> writes:
> Hi all,
>
> is there a possibility to exclude (or include) parts of the document
> based on some babel source block result?
>
> First some use case:
> Say, I am doing a statistical test. And only if the test turns out to be
> significant, a follow-up analysis is carried out.
>
> Is that possible?
>
> One thinkable and ugly option would be to allow lisp-generated tags like
> in this dummy example:
>
> #+begin_org
>
> * The Test
> #+name: sometest
> #+begin_src R
> test_result <- 0.03
> #+end_src
>
>
> ** export maybe (if (< (string-to-number (sbe sometest)) 0.05) ":export:" ":noexport:")
> The follow-up
>
> #+end_org
>
>
> Regards,
> Andreas
>
>
Hi Andreas,
When doing something this complex you may just want to write your own
function which could say... take a subtree ID and a boolean flag as
arguments and then set the export flag on that subtree as appropriate.
The org-id-goto and org-toggle-comment functions may help in
implementing this function.
Best,
--
Eric Schulte
http://cs.unm.edu/~eschulte
^ permalink raw reply [flat|nested] 6+ messages in thread
* Re: conditional export based on babel result
2012-09-05 16:09 ` Thomas S. Dye
@ 2012-09-05 18:57 ` Andreas Leha
0 siblings, 0 replies; 6+ messages in thread
From: Andreas Leha @ 2012-09-05 18:57 UTC (permalink / raw
To: emacs-orgmode
tsd@tsdye.com (Thomas S. Dye) writes:
> Hi Andreas,
>
> Perhaps you could generate the conditional parts of the document from
> source code blocks? Pass in your test result and either export "" or
> #+begin_latex ... #+end_latex?
>
Hi Tom,
thanks for the suggestion. I have indeed done that already but I will
avoid such things in the future. It (a) feels wrong and (b) is ugly code
when I write (parts of) my document using print() and cat() functions.
Regards,
Andreas
>
> Andreas Leha <andreas.leha@med.uni-goettingen.de> writes:
>
>> Hi all,
>>
>> is there a possibility to exclude (or include) parts of the document
>> based on some babel source block result?
>>
>> First some use case:
>> Say, I am doing a statistical test. And only if the test turns out to be
>> significant, a follow-up analysis is carried out.
>>
>> Is that possible?
>>
>> One thinkable and ugly option would be to allow lisp-generated tags like
>> in this dummy example:
>>
>> #+begin_org
>>
>> * The Test
>> #+name: sometest
>> #+begin_src R
>> test_result <- 0.03
>> #+end_src
>>
>>
>> ** export maybe (if (< (string-to-number (sbe sometest)) 0.05)
>> ":export:" ":noexport:")
>> The follow-up
>>
>> #+end_org
>>
>>
>> Regards,
>> Andreas
>>
>>
>>
^ permalink raw reply [flat|nested] 6+ messages in thread
* Re: conditional export based on babel result
2012-09-05 18:08 ` Eric Schulte
@ 2012-09-05 19:04 ` Andreas Leha
2012-09-06 19:07 ` cberry
0 siblings, 1 reply; 6+ messages in thread
From: Andreas Leha @ 2012-09-05 19:04 UTC (permalink / raw
To: emacs-orgmode
Eric Schulte <eric.schulte@gmx.com> writes:
> Andreas Leha <andreas.leha@med.uni-goettingen.de> writes:
>
>> Hi all,
>>
>> is there a possibility to exclude (or include) parts of the document
>> based on some babel source block result?
>>
>> First some use case:
>> Say, I am doing a statistical test. And only if the test turns out to be
>> significant, a follow-up analysis is carried out.
>>
>> Is that possible?
>>
>> One thinkable and ugly option would be to allow lisp-generated tags like
>> in this dummy example:
>>
>> #+begin_org
>>
>> * The Test
>> #+name: sometest
>> #+begin_src R
>> test_result <- 0.03
>> #+end_src
>>
>>
>> ** export maybe (if (< (string-to-number (sbe sometest)) 0.05) ":export:" ":noexport:")
>> The follow-up
>>
>> #+end_org
>>
>>
>> Regards,
>> Andreas
>>
>>
>
> Hi Andreas,
>
> When doing something this complex you may just want to write your own
> function which could say... take a subtree ID and a boolean flag as
> arguments and then set the export flag on that subtree as appropriate.
>
> The org-id-goto and org-toggle-comment functions may help in
> implementing this function.
>
> Best,
Hi Eric,
in my opinion, there are more complex things in org-mode already ;-)
I agree, that such functionality doesn't need to be provided in org
itself.
Thanks a lot for the pointers to possible entry-points for an
implementation. I hope, I'll find time to to go for it. Would be good
for my elisp, anyway...
Regards,
Andreas
^ permalink raw reply [flat|nested] 6+ messages in thread
* Re: conditional export based on babel result
2012-09-05 19:04 ` Andreas Leha
@ 2012-09-06 19:07 ` cberry
0 siblings, 0 replies; 6+ messages in thread
From: cberry @ 2012-09-06 19:07 UTC (permalink / raw
To: emacs-orgmode
Andreas Leha <andreas.leha@med.uni-goettingen.de> writes:
I am a bit late to the thread, but two possibilities come to mind:
1) write a brew template as
#+name: brewtemp
#+begin_src latex
...
#end_src block
then call it as
#+begin_src R :noweb yes :results output latex
brew(text=
<<brewtemp>>
)
#+end_src
Brew allows loops and conditionals over both markup and code, which
allows you to choose or skip a sub-document as the R code dictates. If
the sub-document is of modest size and complexity, this is reasonably
easy and the brew markup will be easy to read.
2) Use ravel (at https://github.com/chasberry/orgmode-accessories/) to
export an org subtree as a knitr parent document in Rnw format (akin to
Sweave) and another org subtree as a knitr child document. The parent
document must call the child from within a code block to allow loops and
conditionals. Then run knitr. For more complicated sub-documents, this
might work better than building brew templates in latex src blocks as
editting the org structure and retooling R src blocks is easier (for me
at least) than re-organizing a lengthy latex src block with embedded
brew calls.
HTH,
Chuck
> Eric Schulte <eric.schulte@gmx.com> writes:
>
>> Andreas Leha <andreas.leha@med.uni-goettingen.de> writes:
>>
>>> Hi all,
>>>
>>> is there a possibility to exclude (or include) parts of the document
>>> based on some babel source block result?
>>>
>>> First some use case:
>>> Say, I am doing a statistical test. And only if the test turns out to be
>>> significant, a follow-up analysis is carried out.
>>>
>>> Is that possible?
>>>
>>> One thinkable and ugly option would be to allow lisp-generated tags like
>>> in this dummy example:
>>>
>>> #+begin_org
>>>
>>> * The Test
>>> #+name: sometest
>>> #+begin_src R
>>> test_result <- 0.03
>>> #+end_src
>>>
>>>
>>> ** export maybe (if (< (string-to-number (sbe sometest)) 0.05) ":export:" ":noexport:")
>>> The follow-up
>>>
>>> #+end_org
>>>
>>>
>>> Regards,
>>> Andreas
>>>
>>>
>>
>> Hi Andreas,
>>
>> When doing something this complex you may just want to write your own
>> function which could say... take a subtree ID and a boolean flag as
>> arguments and then set the export flag on that subtree as appropriate.
>>
>> The org-id-goto and org-toggle-comment functions may help in
>> implementing this function.
>>
>> Best,
>
> Hi Eric,
>
> in my opinion, there are more complex things in org-mode already ;-)
>
> I agree, that such functionality doesn't need to be provided in org
> itself.
> Thanks a lot for the pointers to possible entry-points for an
> implementation. I hope, I'll find time to to go for it. Would be good
> for my elisp, anyway...
>
> Regards,
> Andreas
>
>
>
--
Charles C. Berry Dept of Family/Preventive Medicine
cberry at ucsd edu UC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901
^ permalink raw reply [flat|nested] 6+ messages in thread
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2012-09-05 12:36 conditional export based on babel result Andreas Leha
2012-09-05 16:09 ` Thomas S. Dye
2012-09-05 18:57 ` Andreas Leha
2012-09-05 18:08 ` Eric Schulte
2012-09-05 19:04 ` Andreas Leha
2012-09-06 19:07 ` cberry
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