I have compiled Emacs 25.0.91.2 with the following commands:
      jorge@jorge-HP-G42:~/tmp/emacs-25.0.91$ ./configure
      jorge@jorge-HP-G42:~/tmp/emacs-25.0.91$ make -k -j4
      jorge@jorge-HP-G42:~/tmp/emacs-25.0.91$ sudo make
      prefix=/usr/local/emacs/ install
Then in Dired I created relative symlinks to /usr/local/bin/ from each
file in /usr/local/emacs/bin.  Then when trying to start the newly
installed Emacs, it was missing basic functionality and showed error
messages.
      $ emacs Warning: arch-dependent data dir
      '/usr/local/libexec/emacs/25.0.91/x86_64-unknown-linux-gnu/': No
      such file or directory Warning: Lisp directory
      '/usr/local/share/emacs/25.0.91/lisp': No such file or directory
      Warning: Could not find simple.el or simple.elc
I have successfully worked around the problem by creating the following
symlinks:
    /usr/local/share/emacs/25.0.91 -> ../../emacs/share/emacs/25.0.91
    /usr/local/libexec -> emacs/libexec

I have attach the terminal output (compressed with xz) when Emacs was
built.  I have compressed the directory where I compiled Emacs, and I
can provide it if you want it.

Regards

In GNU Emacs 25.0.91.2 (x86_64-unknown-linux-gnu, GTK+ Version 3.18.6)
 of 2016-02-20 built on jorge-HP-G42
Windowing system distributor 'The X.Org Foundation', version
11.0.11702000
System Description:	Ubuntu 15.10

Configured features:
XPM JPEG TIFF GIF PNG RSVG IMAGEMAGICK SOUND GPM DBUS GCONF GSETTINGS
NOTIFY ACL LIBSELINUX GNUTLS LIBXML2 FREETYPE M17N_FLT LIBOTF XFT ZLIB
TOOLKIT_SCROLL_BARS GTK3 X11

Important settings:
  value of $LC_CTYPE: pt_BR.UTF-8
  value of $LC_MONETARY: pt_BR.UTF-8
  value of $LC_NUMERIC: pt_BR.UTF-8
  value of $LC_TIME: pt_BR.UTF-8
  value of $LANG: en_US.UTF-8
  value of $XMODIFIERS: @im=ibus
  locale-coding-system: utf-8-unix

Major mode: Info

Minor modes in effect:
  shell-dirtrack-mode: t
  savehist-mode: t
  window-numbering-mode: t
  display-time-mode: t
  show-paren-mode: t
  tooltip-mode: t
  global-eldoc-mode: t
  electric-indent-mode: t
  mouse-wheel-mode: t
  menu-bar-mode: t
  file-name-shadow-mode: t
  global-font-lock-mode: t
  font-lock-mode: t
  blink-cursor-mode: t
  auto-composition-mode: t
  auto-encryption-mode: t
  auto-compression-mode: t
  buffer-read-only: t
  size-indication-mode: t
  column-number-mode: t
  line-number-mode: t
  transient-mark-mode: t

Recent messages:
Starting new Ispell process /usr/bin/aspell with pt_BR dictionary...
Mark set
Saving file /home/jorge/org/saúde/registro-dia.org...
Delete excess backup versions of /home/jorge/org/saúde/registro-
dia.org? (y or n) y
Wrote /home/jorge/org/saúde/registro-dia.org
Type C-x 1 to delete the help window.
Making completion list...
Quit
GNU Emacs 25.0.91.2 (x86_64-unknown-linux-gnu, GTK+ Version 3.18.6) of
2016-02-20
Mark set

Load-path shadows:
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Features:
(shadow sort mail-extr emacsbug sendmail sh-script smie executable
tramp-cache tramp-sh tramp tramp-compat tramp-loaddefs trampver
ucs-normalize ox-odt rng-loc rng-uri rng-parse rng-match rng-dt rng-
util
rng-pttrn nxml-parse nxml-ns nxml-enc xmltok nxml-util ox-latex
ox-icalendar ox-html ox-ascii ox-publish ox gnus-msg gnus-art mm-uu
mml2015 mm-view mml-smime smime dig gnus-sum gnus-group gnus-undo
gnus-start gnus-cloud nnimap nnmail mail-source tls gnutls utf7 netrc
nnoo gnus-spec gnus-int gnus-range gnus-win message rfc822 mml mml-sec
epg mm-decode mm-bodies mm-encode mail-parse rfc2231 rfc2047 rfc2045
ietf-drums mailabbrev gmm-utils mailheader gnus gnus-ems nnheader
mail-utils wid-edit shell tabify bookmark pp org-archive eieio-opt
speedbar sb-image ezimage dframe character-fold misearch multi-isearch
dired-aux apropos goto-addr thingatpt view solar cal-dst cal-julian
cal-move parse-time cal-iso org-clock org-table appt flyspell org-drill
savehist org-learn org-id hi-lock cl org-w3m org-rmail org-mhe org-irc
org-info org-gnus org-docview doc-view jka-compr image-mode dired-x
dired org-bibtex bibtex org-bbdb org-element avl-tree rainbow-
delimiters
disp-table whitespace ispell diary-lib diary-loaddefs filenotify
notifications dbus org-mobile org-agenda org advice org-macro
org-footnote org-pcomplete pcomplete org-list org-faces org-entities
noutline outline easy-mmode org-version ob-emacs-lisp ob ob-tangle
ob-ref ob-lob ob-table ob-exp org-src ob-keys ob-comint comint
ansi-color ring ob-core ob-eval org-compat org-macs org-loaddefs
format-spec find-func window-numbering google-contacts-message
google-contacts xml url-cache url url-proxy url-privacy url-expand
url-methods url-history url-cookie url-domsuf mailcap url-util url-
parse
auth-source cl-seq eieio byte-opt bytecomp byte-compile cl-extra cconv
eieio-core cl-macs gv gnus-util mm-util help-fns help-mode cl-loaddefs
pcase cl-lib mail-prsvr password-cache url-vars google-oauth finder-inf
info package epg-config time paren holidays hol-loaddefs cal-menu
easymenu calendar cal-loaddefs time-date mule-util tooltip eldoc
electric uniquify ediff-hook vc-hooks lisp-float-type mwheel x-win
term/common-win x-dnd tool-bar dnd fontset image regexp-opt fringe
tabulated-list newcomment elisp-mode lisp-mode prog-mode register page
menu-bar rfn-eshadow timer select scroll-bar mouse jit-lock font-lock
syntax facemenu font-core frame cl-generic cham georgian utf-8-lang
misc-lang vietnamese tibetan thai tai-viet lao korean japanese eucjp-ms
cp51932 hebrew greek romanian slovak czech european ethiopic indian
cyrillic chinese charscript case-table epa-hook jka-cmpr-hook help
simple abbrev minibuffer cl-preloaded nadvice loaddefs button faces
cus-face macroexp files text-properties overlay sha1 md5 base64 format
env code-pages mule custom widget hashtable-print-readable backquote
dbusbind inotify dynamic-setting system-font-setting font-render-
setting
move-toolbar gtk x-toolkit x multi-tty make-network-process emacs)

Memory information:
((conses 16 657366 167040)
 (symbols 48 47591 0)
 (miscs 40 8344 14791)
 (strings 32 128325 13283)
 (string-bytes 1 3829867)
 (vectors 16 72625)
 (vector-slots 8 1968304 65995)
 (floats 8 942 510)
 (intervals 56 34750 4443)
 (buffers 976 37)
 (heap 1024 81309 46692))