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From: dkcombs@panix.com (David Combs)
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Subject: Re: NTemacs: *** desktop-read: "Warning: desktop file appears to be
	in	use by PID 1568."
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In article <mailman.1623.1246420311.2239.help-gnu-emacs@gnu.org>,
Eli Zaretskii  <eliz@gnu.org> wrote:
>> From: dkcombs@panix.com (David Combs)
>> Date: 29 Jun 2009 16:26:41 -0400
>> 
>> 
>> Loading desktop...done
>> Warning: desktop file appears to be in use by PID 1568.
>> Using it may cause conflicts.  Use it anyway? (y or n) 
>> Quit [4 times]
>> Mark saved where search started [2 times]
>> 
>> 
>> 
>> Happens every time.
>
>How do you usually stop Emacs?
>
>

M-x save-buffers-kill-emacs, that's how.

David