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From: Hans BKK <hansbkk@gmail.com>
Newsgroups: gmane.emacs.help
Subject: Re: mouse-movement getting in the way
Date: Fri, 8 Aug 2014 07:42:17 -0700 (PDT)
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Why are you moving the mouse into that screen? Use your DE/wm's keyboard shortcuts to switch focus.

> Check out the manpages for xbindkeys and wmctrl for more. 

Also xdotools and autohotkeys