bug#67949: 29.1; package-vc-{install,upgrade} modifies tracked files

[Sean Allred <allred.sean@gmail.com>]

Run the following from `emacs -Q`:

    (package-vc-install
     '(bugreport :url "git@github.com:vermiculus/bugreport-20231221.git"))
    (package-vc-upgrade (cadr (assq 'bugreport package-alist)))

forking/modifying the above as you please.

On upgrade, this complains that

    Running "git pull --stat"...
    error: cannot pull with rebase: You have unstaged changes.
    error: Please commit or stash them.

git-diff reveals the culprit:

    diff --git a/bugreport-pkg.el b/bugreport-pkg.el
    index df8438a..e8947d3 100644
    --- a/bugreport-pkg.el
    +++ b/bugreport-pkg.el
    @@ -1,4 +1,2 @@
    -(define-package
    -  "bugreport20231221"
    -  "0.1"
    -  "Bug report on 2023-12-21")
    +;;; Generated package description from bugreport.el  -*- no-byte-compile: t -*-
    +(define-package "bugreport" "0" "No description available." 'nil :kind vc)

and that 'Generated package description' language seems to be coming
from `package-vc--generate-description-file`:

    (write-region (concat ";;; Generated package description from " (replace-regexp-in-string "-pkg\\.el\\'" ".el" (file-name-nondirectory pkg-file)) "  -*- no-byte-compile: t -*-\n" (prin1-to-string (nconc (list 'define-package (symbol-name name) (package-vc--version pkg-desc) (let ((cl-x pkg-desc)) (progn (or ... ...) (aref cl-x 3))) (let ((requires ...)) (list 'quote (mapcar ... requires)))) (list :kind 'vc) (package--alist-to-plist-args (let ((cl-x pkg-desc)) (progn (or ... ...) (aref cl-x 8)))))) "\n") nil pkg-file nil 'silent)
    (let ((print-level nil) (print-quoted t) (print-length nil)) (write-region (concat ";;; Generated package description from " (replace-regexp-in-string "-pkg\\.el\\'" ".el" (file-name-nondirectory pkg-file)) "  -*- no-byte-compile: t -*-\n" (prin1-to-string (nconc (list 'define-package (symbol-name name) (package-vc--version pkg-desc) (let (...) (progn ... ...)) (let (...) (list ... ...))) (list :kind 'vc) (package--alist-to-plist-args (let (...) (progn ... ...))))) "\n") nil pkg-file nil 'silent))
    (let ((name (let ((cl-x pkg-desc)) (progn (or (progn (and ... t)) (signal 'wrong-type-argument (list ... cl-x))) (aref cl-x 1))))) (if (let ((cl-x pkg-desc)) (progn (or (progn (and (memq ... cl-struct-package-desc-tags) t)) (signal 'wrong-type-argument (list 'package-desc cl-x))) (aref cl-x 3))) nil (let ((cl-x pkg-desc)) (or (progn (and (memq (type-of cl-x) cl-struct-package-desc-tags) t)) (signal 'wrong-type-argument (list 'package-desc cl-x))) (let* ((v cl-x)) (aset v 3 (let ((main-file ...)) (or (let ... ...) (let* ... ...) (and main-file ... ...) package--default-summary)))))) (let ((print-level nil) (print-quoted t) (print-length nil)) (write-region (concat ";;; Generated package description from " (replace-regexp-in-string "-pkg\\.el\\'" ".el" (file-name-nondirectory pkg-file)) "  -*- no-byte-compile: t -*-\n" (prin1-to-string (nconc (list 'define-package (symbol-name name) (package-vc--version pkg-desc) (let ... ...) (let ... ...)) (list :kind 'vc) (package--alist-to-plist-args (let ... ...)))) "\n") nil pkg-file nil 'silent)))
    package-vc--generate-description-file(#s(package-desc :name bugreport-20231221 :version nil :summary "No description available." :reqs nil :kind vc :archive nil :dir "/Users/sallred/.emacs.d/elpa/bugreport-20231221/" :extras nil :signed nil) "/Users/sallred/.emacs.d/elpa/bugreport-20231221/bu...")
    package-vc--unpack-1(#s(package-desc :name bugreport-20231221 :version nil :summary "No description available." :reqs nil :kind vc :archive nil :dir "/Users/sallred/.emacs.d/elpa/bugreport-20231221/" :extras nil :signed nil) "/Users/sallred/.emacs.d/elpa/bugreport-20231221/")
    (progn (if (string-empty-p name) (progn (user-error "Empty package name"))) (progn (or (progn (and (memq (type-of pkg-desc) cl-struct-package-desc-tags) t)) (signal 'wrong-type-argument (list 'package-desc pkg-desc))) (let* ((v pkg-desc)) (aset v 7 pkg-dir))) (if (file-exists-p pkg-dir) (progn (if (yes-or-no-p (format "Overwrite previous checkout for package `%s'?" name)) (package--delete-directory pkg-dir) (error "There already exists a checkout for %s" name)))) (package-vc--clone pkg-desc pkg-spec pkg-dir rev) (if (directory-empty-p pkg-dir) (progn (delete-directory pkg-dir) (error "Empty checkout for %s" name))) (if (seq-remove #'(lambda (file) (member (file-name-nondirectory file) package-vc-non-code-file-names)) (directory-files-recursively pkg-dir "\\.el\\'" nil)) nil (if (yes-or-no-p (format "No Emacs Lisp files found when fetching \"%s\", abor..." name)) (progn (delete-directory pkg-dir t) (user-error "Installation aborted")))) (catch 'done (let ((tail '("lisp" "src"))) (while tail (let ((name (car tail))) (let* ((s ...) (dir ...) (s ...) (s ...)) (if s (throw ... ...))) (setq tail (cdr tail)))))) (if (seq-some #'(lambda (alist) (equal (alist-get name (cdr alist)) pkg-spec)) package-vc--archive-spec-alists) nil (customize-save-variable 'package-vc-selected-packages (cons (cons name pkg-spec) (seq-remove #'(lambda (spec) (string= name ...)) package-vc-selected-packages)))) (package-vc--unpack-1 pkg-desc pkg-dir))
    (let* ((name (progn (or (progn (and (memq ... cl-struct-package-desc-tags) t)) (signal 'wrong-type-argument (list 'package-desc pkg-desc))) (aref pkg-desc 1))) (dirname (package-desc-full-name pkg-desc)) (pkg-dir (file-name-as-directory (expand-file-name dirname package-user-dir)))) (progn (if (string-empty-p name) (progn (user-error "Empty package name"))) (progn (or (progn (and (memq (type-of pkg-desc) cl-struct-package-desc-tags) t)) (signal 'wrong-type-argument (list 'package-desc pkg-desc))) (let* ((v pkg-desc)) (aset v 7 pkg-dir))) (if (file-exists-p pkg-dir) (progn (if (yes-or-no-p (format "Overwrite previous checkout for package `%s'?" name)) (package--delete-directory pkg-dir) (error "There already exists a checkout for %s" name)))) (package-vc--clone pkg-desc pkg-spec pkg-dir rev) (if (directory-empty-p pkg-dir) (progn (delete-directory pkg-dir) (error "Empty checkout for %s" name))) (if (seq-remove #'(lambda (file) (member (file-name-nondirectory file) package-vc-non-code-file-names)) (directory-files-recursively pkg-dir "\\.el\\'" nil)) nil (if (yes-or-no-p (format "No Emacs Lisp files found when fetching \"%s\", abor..." name)) (progn (delete-directory pkg-dir t) (user-error "Installation aborted")))) (catch 'done (let ((tail '("lisp" "src"))) (while tail (let ((name ...)) (let* (... ... ... ...) (if s ...)) (setq tail (cdr tail)))))) (if (seq-some #'(lambda (alist) (equal (alist-get name ...) pkg-spec)) package-vc--archive-spec-alists) nil (customize-save-variable 'package-vc-selected-packages (cons (cons name pkg-spec) (seq-remove #'(lambda ... ...) package-vc-selected-packages)))) (package-vc--unpack-1 pkg-desc pkg-dir)))
    (let ((lisp-dir x285)) (let* ((name (progn (or (progn (and ... t)) (signal 'wrong-type-argument (list ... pkg-desc))) (aref pkg-desc 1))) (dirname (package-desc-full-name pkg-desc)) (pkg-dir (file-name-as-directory (expand-file-name dirname package-user-dir)))) (progn (if (string-empty-p name) (progn (user-error "Empty package name"))) (progn (or (progn (and (memq ... cl-struct-package-desc-tags) t)) (signal 'wrong-type-argument (list 'package-desc pkg-desc))) (let* ((v pkg-desc)) (aset v 7 pkg-dir))) (if (file-exists-p pkg-dir) (progn (if (yes-or-no-p (format "Overwrite previous checkout for package `%s'?" name)) (package--delete-directory pkg-dir) (error "There already exists a checkout for %s" name)))) (package-vc--clone pkg-desc pkg-spec pkg-dir rev) (if (directory-empty-p pkg-dir) (progn (delete-directory pkg-dir) (error "Empty checkout for %s" name))) (if (seq-remove #'(lambda (file) (member ... package-vc-non-code-file-names)) (directory-files-recursively pkg-dir "\\.el\\'" nil)) nil (if (yes-or-no-p (format "No Emacs Lisp files found when fetching \"%s\", abor..." name)) (progn (delete-directory pkg-dir t) (user-error "Installation aborted")))) (catch 'done (let ((tail '...)) (while tail (let (...) (let* ... ...) (setq tail ...))))) (if (seq-some #'(lambda (alist) (equal ... pkg-spec)) package-vc--archive-spec-alists) nil (customize-save-variable 'package-vc-selected-packages (cons (cons name pkg-spec) (seq-remove #'... package-vc-selected-packages)))) (package-vc--unpack-1 pkg-desc pkg-dir))))
    (let* ((x285 (map-elt pkg-spec :lisp-dir))) (let ((lisp-dir x285)) (let* ((name (progn (or (progn ...) (signal ... ...)) (aref pkg-desc 1))) (dirname (package-desc-full-name pkg-desc)) (pkg-dir (file-name-as-directory (expand-file-name dirname package-user-dir)))) (progn (if (string-empty-p name) (progn (user-error "Empty package name"))) (progn (or (progn (and ... t)) (signal 'wrong-type-argument (list ... pkg-desc))) (let* ((v pkg-desc)) (aset v 7 pkg-dir))) (if (file-exists-p pkg-dir) (progn (if (yes-or-no-p ...) (package--delete-directory pkg-dir) (error "There already exists a checkout for %s" name)))) (package-vc--clone pkg-desc pkg-spec pkg-dir rev) (if (directory-empty-p pkg-dir) (progn (delete-directory pkg-dir) (error "Empty checkout for %s" name))) (if (seq-remove #'(lambda ... ...) (directory-files-recursively pkg-dir "\\.el\\'" nil)) nil (if (yes-or-no-p (format "No Emacs Lisp files found when fetching \"%s\", abor..." name)) (progn (delete-directory pkg-dir t) (user-error "Installation aborted")))) (catch 'done (let ((tail ...)) (while tail (let ... ... ...)))) (if (seq-some #'(lambda ... ...) package-vc--archive-spec-alists) nil (customize-save-variable 'package-vc-selected-packages (cons (cons name pkg-spec) (seq-remove ... package-vc-selected-packages)))) (package-vc--unpack-1 pkg-desc pkg-dir)))))
    (progn (ignore (mapp pkg-spec)) (let* ((x285 (map-elt pkg-spec :lisp-dir))) (let ((lisp-dir x285)) (let* ((name (progn (or ... ...) (aref pkg-desc 1))) (dirname (package-desc-full-name pkg-desc)) (pkg-dir (file-name-as-directory (expand-file-name dirname package-user-dir)))) (progn (if (string-empty-p name) (progn (user-error "Empty package name"))) (progn (or (progn ...) (signal ... ...)) (let* (...) (aset v 7 pkg-dir))) (if (file-exists-p pkg-dir) (progn (if ... ... ...))) (package-vc--clone pkg-desc pkg-spec pkg-dir rev) (if (directory-empty-p pkg-dir) (progn (delete-directory pkg-dir) (error "Empty checkout for %s" name))) (if (seq-remove #'... (directory-files-recursively pkg-dir "\\.el\\'" nil)) nil (if (yes-or-no-p ...) (progn ... ...))) (catch 'done (let (...) (while tail ...))) (if (seq-some #'... package-vc--archive-spec-alists) nil (customize-save-variable 'package-vc-selected-packages (cons ... ...))) (package-vc--unpack-1 pkg-desc pkg-dir))))))
    package-vc--unpack(#s(package-desc :name bugreport-20231221 :version nil :summary "No description available." :reqs nil :kind vc :archive nil :dir "/Users/sallred/.emacs.d/elpa/bugreport-20231221/" :extras nil :signed nil) (:url "git@github.com:vermiculus/bugreport-20231221.git") nil)
    package-vc-install((bugreport-20231221 :url "git@github.com:vermiculus/bugreport-20231221.git"))


In GNU Emacs 29.1 (build 1, aarch64-apple-darwin21.6.0, NS
 appkit-2113.60 Version 12.6.6 (Build 21G646)) of 2023-07-30 built on
 armbob.lan
Windowing system distributor 'Apple', version 10.3.2299
System Description:  macOS 13.6.1

Configured using:
 'configure --with-ns '--enable-locallisppath=/Library/Application
 Support/Emacs/${version}/site-lisp:/Library/Application
 Support/Emacs/site-lisp' --with-modules 'CFLAGS=-DFD_SETSIZE=10000
 -DDARWIN_UNLIMITED_SELECT' --with-x-toolkit=no'

Configured features:
ACL GLIB GMP GNUTLS JPEG JSON LIBXML2 MODULES NOTIFY KQUEUE NS PDUMPER
PNG RSVG THREADS TIFF TOOLKIT_SCROLL_BARS TREE_SITTER ZLIB

Important settings:
  value of $LANG: en_US.UTF-8
  locale-coding-system: utf-8-unix

Major mode: Compilation

Minor modes in effect:
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Load-path shadows:
/Users/sallred/.emacs.d/elpa/bugreport/bugreport-pkg hides /Users/sallred/.emacs.d/elpa/bugreport-20231221/bugreport-pkg
/Users/sallred/.emacs.d/elpa/bugreport/bugreport hides /Users/sallred/.emacs.d/elpa/bugreport-20231221/bugreport
/Users/sallred/.emacs.d/elpa/emc2/emc2 hides ~/git/gitlab.epic.com/sallred/emc2.el/emc2
/Users/sallred/.emacs.d/elpa/emc2/emc2-pkg hides ~/git/gitlab.epic.com/sallred/emc2.el/emc2-pkg
/Users/sallred/.emacs.d/elpa/emc2/emc2-summary hides ~/git/gitlab.epic.com/sallred/emc2.el/emc2-summary
/Users/sallred/.emacs.d/elpa/emc2/emc2-magit-checkout hides ~/git/gitlab.epic.com/sallred/emc2.el/emc2-magit-checkout
/Users/sallred/.emacs.d/elpa/emc2/emc2-delorean hides ~/git/gitlab.epic.com/sallred/emc2.el/emc2-delorean
/Users/sallred/.emacs.d/elpa/emc2/emc2-org-tlg hides ~/git/gitlab.epic.com/sallred/emc2.el/emc2-org-tlg
/Users/sallred/.emacs.d/elpa/emc2/emc2-magit-pull-request hides ~/git/gitlab.epic.com/sallred/emc2.el/emc2-magit-pull-request
/Users/sallred/.emacs.d/elpa/emc2/emc2-org hides ~/git/gitlab.epic.com/sallred/emc2.el/emc2-org
/Users/sallred/.emacs.d/elpa/emc2/emc2-workplan hides ~/git/gitlab.epic.com/sallred/emc2.el/emc2-workplan
/Users/sallred/.emacs.d/elpa/emc2/emc2-magit hides ~/git/gitlab.epic.com/sallred/emc2.el/emc2-magit
/Users/sallred/.emacs.d/elpa/emc2/emc2-org-gitlab hides ~/git/gitlab.epic.com/sallred/emc2.el/emc2-org-gitlab
/Users/sallred/.emacs.d/elpa/emc2/emc2-org-workplan hides ~/git/gitlab.epic.com/sallred/emc2.el/emc2-org-workplan
/Users/sallred/.emacs.d/elpa/emc2/emc2-ts hides ~/git/gitlab.epic.com/sallred/emc2.el/emc2-ts
/Users/sallred/.emacs.d/elpa/emc2/emc2-magit-cherry-pick hides ~/git/gitlab.epic.com/sallred/emc2.el/emc2-magit-cherry-pick
/Users/sallred/.emacs.d/elpa/transient-20231129.1714/transient hides /Applications/Emacs.app/Contents/Resources/lisp/transient
/Users/sallred/.emacs.d/elpa/use-package-20230203.2004/use-package-jump hides /Applications/Emacs.app/Contents/Resources/lisp/use-package/use-package-jump
/Users/sallred/.emacs.d/elpa/use-package-20230203.2004/use-package-ensure hides /Applications/Emacs.app/Contents/Resources/lisp/use-package/use-package-ensure
/Users/sallred/.emacs.d/elpa/use-package-20230203.2004/use-package-core hides /Applications/Emacs.app/Contents/Resources/lisp/use-package/use-package-core
/Users/sallred/.emacs.d/elpa/use-package-20230203.2004/use-package-delight hides /Applications/Emacs.app/Contents/Resources/lisp/use-package/use-package-delight
/Users/sallred/.emacs.d/elpa/use-package-20230203.2004/use-package-diminish hides /Applications/Emacs.app/Contents/Resources/lisp/use-package/use-package-diminish
/Users/sallred/.emacs.d/elpa/use-package-20230203.2004/use-package hides /Applications/Emacs.app/Contents/Resources/lisp/use-package/use-package
/Users/sallred/.emacs.d/elpa/use-package-20230203.2004/use-package-bind-key hides /Applications/Emacs.app/Contents/Resources/lisp/use-package/use-package-bind-key
/Users/sallred/.emacs.d/elpa/use-package-20230203.2004/use-package-lint hides /Applications/Emacs.app/Contents/Resources/lisp/use-package/use-package-lint
/Users/sallred/.emacs.d/elpa/seq-2.24/seq hides /Applications/Emacs.app/Contents/Resources/lisp/emacs-lisp/seq

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epg rfc6068 epg-config pixel-scroll cua-base ring help-at-pt cus-load
dired dired-loaddefs rx ample-theme f f-shortdoc dash s cl-extra
help-mode edmacro kmacro use-package use-package-ensure
use-package-delight use-package-diminish use-package-bind-key bind-key
easy-mmode use-package-core alert-autoloads all-the-icons-autoloads
ample-theme-autoloads apiwrap-autoloads auctex-autoloads tex-site
basic-mode-autoloads corfu-autoloads dart-mode-autoloads
dashboard-autoloads diminish-autoloads dockerfile-mode-autoloads
edit-indirect-autoloads embark-consult-autoloads consult-autoloads
embark-autoloads emc2-autoloads exec-path-from-shell-autoloads
flycheck-autoloads flymake-shellcheck-autoloads forge-autoloads
closql-autoloads ghub-autoloads git-modes-autoloads gntp-autoloads
go-mode-autoloads graphql-autoloads graphql-mode-autoloads
helpful-autoloads elisp-refs-autoloads htmlize-autoloads hydra-autoloads
log4e-autoloads lv-autoloads magit-autoloads pcase git-commit-autoloads
marginalia-autoloads markdown-mode-autoloads mastodon-autoloads
mermaid-mode-autoloads multiple-cursors-autoloads orderless-autoloads
org-bullets-autoloads org-contrib-autoloads org-mru-clock-autoloads
org-ql-autoloads org-roam-autoloads magit-section-autoloads
emacsql-autoloads org-super-agenda-autoloads ht-autoloads
org-tree-slide-autoloads ov-autoloads ox-gfm-autoloads peg-autoloads
persist-autoloads pkg-info-autoloads epl-autoloads powershell-autoloads
prettier-autoloads editorconfig-autoloads nvm-autoloads f-autoloads
iter2-autoloads request-autoloads rg-autoloads rust-mode-autoloads
sqlite3-autoloads tj3-mode-autoloads transient-autoloads
tree-sitter-indent-autoloads tree-sitter-autoloads finder-inf
treesit-auto-autoloads dash-autoloads tsc-autoloads
typescript-mode-autoloads url-auth vertico-autoloads wgrep-autoloads
which-key-autoloads with-editor-autoloads info compat-autoloads
seq-autoloads package browse-url url url-proxy url-privacy url-expand
url-methods url-history url-cookie generate-lisp-file url-domsuf
url-util mailcap url-handlers url-parse auth-source cl-seq eieio
eieio-core cl-macs password-cache json subr-x map byte-opt gv bytecomp
byte-compile url-vars cl-loaddefs cl-lib rmc iso-transl tooltip cconv
eldoc paren electric uniquify ediff-hook vc-hooks lisp-float-type
elisp-mode mwheel term/ns-win ns-win ucs-normalize mule-util
term/common-win tool-bar dnd fontset image regexp-opt fringe
tabulated-list replace newcomment text-mode lisp-mode prog-mode register
page tab-bar menu-bar rfn-eshadow isearch easymenu timer select
scroll-bar mouse jit-lock font-lock syntax font-core term/tty-colors
frame minibuffer nadvice seq simple cl-generic indonesian philippine
cham georgian utf-8-lang misc-lang vietnamese tibetan thai tai-viet lao
korean japanese eucjp-ms cp51932 hebrew greek romanian slovak czech
european ethiopic indian cyrillic chinese composite emoji-zwj charscript
charprop case-table epa-hook jka-cmpr-hook help abbrev obarray oclosure
cl-preloaded button loaddefs theme-loaddefs faces cus-face macroexp
files window text-properties overlay sha1 md5 base64 format env
code-pages mule custom widget keymap hashtable-print-readable backquote
threads kqueue cocoa ns multi-tty make-network-process emacs)

Memory information:
((conses 16 2559529 322683)
 (symbols 48 65117 98)
 (strings 32 461753 41439)
 (string-bytes 1 15812751)
 (vectors 16 154942)
 (vector-slots 8 2726143 179725)
 (floats 8 1786 1057)
 (intervals 56 221145 24719)
 (buffers 984 154))

-- 
Sean Allred