* bug#52354: 27.2; bibtex-sort-buffers fails at least for types @PhdThesis and @TechReport
@ 2021-12-07 15:01 Dominik Schrempf
2021-12-10 12:22 ` Lars Ingebrigtsen
0 siblings, 1 reply; 8+ messages in thread
From: Dominik Schrempf @ 2021-12-07 15:01 UTC (permalink / raw)
To: 52354
Hello!
When using `bibtex-sort-buffers' on a BibTeX file with BibLaTeX dialect,
items of type @PhdThesis and @TechReport (but probably other types too)
are not sorted correctly.
For example, the following order is not changed when executing the
mentioned function:
@Article{Shaw2013, ...}
@PhdThesis{Siren2012, ...}
@Article{Shih2013, ...}
The Siren2012 entry should be moved after the Shih2013 entry.
Another example:
@Article{Smith1974, ...}
@PhdThesis{Stadler2008, ...}
@Article{Smith2013a, ...}
Thank you for looking into this!
Kind regards,
Dominik Schrempf
In GNU Emacs 27.2 (build 1, x86_64-pc-linux-gnu, GTK+ Version 3.24.30, cairo version 1.16.0)
Windowing system distributor 'The X.Org Foundation', version 11.0.12013000
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Features:
(shadow mail-extr emacsbug sendmail flycheck-cask evil-embrace
evil-surround eros elisp-demos evil-collection-indent highlight-quoted
evil-collection-helpful helpful trace evil-collection-edebug edebug
backtrace info-look evil-collection-info info help-fns radix-tree
evil-collection-elisp-refs elisp-refs sort evil-collection-help
image-file org-crypt org-eldoc embrace expand-region
text-mode-expansions cc-mode-expansions the-org-mode-expansions
latex-mode-expansions er-basic-expansions expand-region-core
expand-region-custom writegood-mode toc-org evil-org org-indent
citar-org diary-lib diary-loaddefs cal-iso evil-org-agenda url-cache
embark-consult evil-collection-embark embark citar citar-file
company-ispell company-dabbrev browse-at-remote bug-reference delsel
hide-mode-line company-yasnippet lsp-diagnostics lsp-modeline dap-mouse
dap-ui gdb-mi bindat gud bui bui-list bui-info bui-entry bui-core
bui-history bui-button bui-utils lsp-lens lsp-ui lsp-ui-flycheck
lsp-ui-doc goto-addr evil-collection-lsp-ui-imenu lsp-ui-imenu
lsp-ui-peek lsp-ui-sideline lsp-ui-util evil-collection-view view
lsp-zig lsp-steep lsp-svelte lsp-sqls lsp-yaml lsp-xml lsp-vimscript
lsp-vhdl lsp-vetur lsp-html lsp-verilog lsp-vala lsp-v lsp-toml
lsp-terraform lsp-tex lsp-sorbet lsp-solargraph lsp-rust lsp-rf lsp-r
lsp-purescript lsp-pylsp lsp-pyls lsp-pwsh lsp-php lsp-perl lsp-ocaml
lsp-nix lsp-nim lsp-markdown lsp-lua lsp-kotlin lsp-json lsp-javascript
lsp-haxe lsp-groovy lsp-hack lsp-graphql lsp-go lsp-completion
lsp-gdscript lsp-fsharp lsp-fortran lsp-eslint lsp-erlang lsp-elixir
lsp-elm lsp-dockerfile lsp-dhall lsp-d lsp-css lsp-csharp lsp-crystal
lsp-cmake lsp-clojure lsp-semantic-tokens lsp-clangd dom lsp-beancount
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dap-java dap-mode dap-launch posframe dap-overlays lsp-java request
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treemacs-mouse-interface treemacs-tags treemacs-persistence
treemacs-filewatch-mode treemacs-follow-mode treemacs-rendering
treemacs-async treemacs-workspaces treemacs-dom treemacs-visuals
treemacs-fringe-indicator treemacs-scope treemacs-faces treemacs-icons
treemacs-themes treemacs-core-utils pfuture treemacs-logging
treemacs-customization treemacs-macros lsp-haskell haskell
haskell-completions haskell-load haskell-commands highlight-uses-mode
haskell-modules haskell-sandbox haskell-navigate-imports haskell-repl
haskell-svg haskell-collapse hideshow haskell-debug
haskell-interactive-mode haskell-presentation-mode haskell-compile
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haskell-mode haskell-cabal haskell-utils haskell-font-lock
haskell-indentation haskell-string haskell-sort-imports haskell-lexeme
haskell-align-imports haskell-complete-module haskell-ghc-support etags
fileloop dabbrev haskell-customize ccls ccls-member-hierarchy
ccls-inheritance-hierarchy ccls-call-hierarchy ccls-tree ccls-code-lens
ccls-semantic-highlight ccls-common smartparens-c cc-mode cc-fonts
cc-guess cc-menus cc-cmds cc-styles cc-align cc-engine cc-vars cc-defs
lsp-mode lsp-protocol spinner network-stream
evil-collection-markdown-mode markdown-mode edit-indirect color inline
ht rainbow-delimiters vi-tilde-fringe highlight-numbers parent-mode
display-line-numbers flyspell-lazy ispell flyspell
evil-collection-sh-script sh-script smie dired-aux cua-base
evil-collection-wdired wdired vc-hg vc-svn diredfl diff-hl-margin
diff-hl-dired evil-collection-diff-hl diff-hl evil-collection-log-view
log-view evil-collection-vc-dir vc-dir ewoc vc vc-dispatcher dired-x
vertico-directory executable evil-anzu anzu doom-snippets
doom-snippets-lib yasnippet evil-collection-elisp-mode elisp-mode
magit-gitflow evil-collection-magit-todos magit-todos pcre2el rxt
re-builder hl-todo async ol-info oc-natbib oc-csl org-ref org-ref-core
org-ref-glossary org-ref-bibtex avy doi-utils org-ref-utils
org-ref-export citeproc citeproc-itemgetters citeproc-biblatex
citeproc-bibtex ol-bibtex ox-org ox-hugo ffap ox-blackfriday ox-odt
rng-loc rng-uri rng-parse rng-match rng-dt rng-util rng-pttrn nxml-parse
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Memory information:
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(symbols 48 89561 2)
(strings 32 336802 183099)
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(vectors 16 137306)
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(buffers 1000 51))
^ permalink raw reply [flat|nested] 8+ messages in thread
* bug#52354: 27.2; bibtex-sort-buffers fails at least for types @PhdThesis and @TechReport
2021-12-07 15:01 bug#52354: 27.2; bibtex-sort-buffers fails at least for types @PhdThesis and @TechReport Dominik Schrempf
@ 2021-12-10 12:22 ` Lars Ingebrigtsen
2021-12-10 13:32 ` Dominik Schrempf
0 siblings, 1 reply; 8+ messages in thread
From: Lars Ingebrigtsen @ 2021-12-10 12:22 UTC (permalink / raw)
To: Dominik Schrempf; +Cc: 52354
Dominik Schrempf <dominik.schrempf@gmail.com> writes:
> When using `bibtex-sort-buffers' on a BibTeX file with BibLaTeX dialect,
> items of type @PhdThesis and @TechReport (but probably other types too)
> are not sorted correctly.
>
> For example, the following order is not changed when executing the
> mentioned function:
>
> @Article{Shaw2013, ...}
> @PhdThesis{Siren2012, ...}
> @Article{Shih2013, ...}
Trying to sort that with `bibtex-sort-buffers' doesn't seem to do
anything, with or without the @PhdThesis entry?
Do you have a complete recipe for reproducing the problem, starting from
"emacs -Q"? (And a complete test file would be helpful, too.)
--
(domestic pets only, the antidote for overdose, milk.)
bloggy blog: http://lars.ingebrigtsen.no
^ permalink raw reply [flat|nested] 8+ messages in thread
* bug#52354: 27.2; bibtex-sort-buffers fails at least for types @PhdThesis and @TechReport
2021-12-10 12:22 ` Lars Ingebrigtsen
@ 2021-12-10 13:32 ` Dominik Schrempf
2021-12-11 3:16 ` Lars Ingebrigtsen
0 siblings, 1 reply; 8+ messages in thread
From: Dominik Schrempf @ 2021-12-10 13:32 UTC (permalink / raw)
To: Lars Ingebrigtsen; +Cc: 52354
[-- Attachment #1: Type: text/plain, Size: 1151 bytes --]
Hello,
thank you for looking into this.
I can reproduce this bug using `emacs -Q`:
1. Start `emacs -Q`.
2. Open the attached bibliography file.
3. `M-x bibtex-set-dialect RET`; `biblatex RET`.
4. `bibtex-sort-buffer`.
I expect the middle entry (@PhdThesis) to move to the bottom but nothing
happens. The file sorts correctly when the dialect is `BibLateX`, and not
changed.
Lars Ingebrigtsen <larsi@gnus.org> writes:
> Dominik Schrempf <dominik.schrempf@gmail.com> writes:
>
>> When using `bibtex-sort-buffers’ on a BibTeX file with BibLaTeX dialect,
>> items of type @PhdThesis and @TechReport (but probably other types too)
>> are not sorted correctly.
>>
>> For example, the following order is not changed when executing the
>> mentioned function:
>>
>> @Article{Shaw2013, …}
>> @PhdThesis{Siren2012, …}
>> @Article{Shih2013, …}
>
> Trying to sort that with `bibtex-sort-buffers’ doesn’t seem to do
> anything, with or without the @PhdThesis entry?
>
> Do you have a complete recipe for reproducing the problem, starting from
> “emacs -Q”? (And a complete test file would be helpful, too.)
[-- Attachment #2: bibliography.bib --]
[-- Type: application/octet-stream, Size: 1155 bytes --]
@Article{Shaw2013,
author = {Shaw, Timothy I. and Ruan, Zheng and Glenn, Travis C. and
Liu, Liang},
title = {STRAW: Species TRee Analysis Web server},
journaltitle = {Nucleic Acids Research},
year = 2013,
volume = 41,
number = {Web Server issue},
pages = {W238--241},
doi = {10.1093/nar/gkt377},
}
@PhdThesis{Siren2012,
Author = {Sirén, Jukka},
Title = {Statistical models for inferring the structure and history
of populations from genetic data},
School = {University of Helsinki},
Year = 2012
}
@Article{Shih2013,
author = {P. M. Shih and N. J. Matzke},
title = {Primary Endosymbiosis Events Date to the Later Proterozoic
with Cross-Calibrated Phylogenetic Dating of Duplicated Atpase
Proteins},
journaltitle = {Proceedings of the National Academy of Sciences},
year = 2013,
volume = 110,
number = 30,
pages = {12355-12360},
doi = {10.1073/pnas.1305813110},
}
^ permalink raw reply [flat|nested] 8+ messages in thread
* bug#52354: 27.2; bibtex-sort-buffers fails at least for types @PhdThesis and @TechReport
2021-12-10 13:32 ` Dominik Schrempf
@ 2021-12-11 3:16 ` Lars Ingebrigtsen
2021-12-19 14:30 ` Dominik Schrempf
0 siblings, 1 reply; 8+ messages in thread
From: Lars Ingebrigtsen @ 2021-12-11 3:16 UTC (permalink / raw)
To: Dominik Schrempf; +Cc: 52354
Dominik Schrempf <dominik.schrempf@gmail.com> writes:
> I can reproduce this bug using `emacs -Q`:
>
> 1. Start `emacs -Q`.
> 2. Open the attached bibliography file.
> 3. `M-x bibtex-set-dialect RET`; `biblatex RET`.
> 4. `bibtex-sort-buffer`.
>
> I expect the middle entry (@PhdThesis) to move to the bottom but nothing
> happens. The file sorts correctly when the dialect is `BibLateX`, and not
> changed.
Thanks; with that I was able to reproduce the issue, and I've now fixed
it in Emacs 29.
--
(domestic pets only, the antidote for overdose, milk.)
bloggy blog: http://lars.ingebrigtsen.no
^ permalink raw reply [flat|nested] 8+ messages in thread
* bug#52354: 27.2; bibtex-sort-buffers fails at least for types @PhdThesis and @TechReport
2021-12-11 3:16 ` Lars Ingebrigtsen
@ 2021-12-19 14:30 ` Dominik Schrempf
2021-12-19 14:36 ` Lars Ingebrigtsen
0 siblings, 1 reply; 8+ messages in thread
From: Dominik Schrempf @ 2021-12-19 14:30 UTC (permalink / raw)
To: Lars Ingebrigtsen; +Cc: 52354
[-- Attachment #1: Type: text/plain, Size: 1005 bytes --]
Hello!
Thank you for working on this. I just checked with a newer Emacs build including
the fix of bug 52354, and sorting still does not work. I think this is because
the relevant entries (PhdThesis and TechReport) were mistakenly added to
`bibtex-BibTeX-entry-alist`, and not `bibtex-biblatex-entry-alist`.
I am referring to commit af1c5ec0fcd3f25234cfe2986c873ff2e5ed63a0.
Thank you for your help!
Dominik
Lars Ingebrigtsen <larsi@gnus.org> writes:
> Dominik Schrempf <dominik.schrempf@gmail.com> writes:
>
>> I can reproduce this bug using `emacs -Q`:
>>
>> 1. Start `emacs -Q`.
>> 2. Open the attached bibliography file.
>> 3. `M-x bibtex-set-dialect RET`; `biblatex RET`.
>> 4. `bibtex-sort-buffer`.
>>
>> I expect the middle entry (@PhdThesis) to move to the bottom but nothing
>> happens. The file sorts correctly when the dialect is `BibLateX`, and not
>> changed.
>
> Thanks; with that I was able to reproduce the issue, and I’ve now fixed
> it in Emacs 29.
^ permalink raw reply [flat|nested] 8+ messages in thread
* bug#52354: 27.2; bibtex-sort-buffers fails at least for types @PhdThesis and @TechReport
2021-12-19 14:30 ` Dominik Schrempf
@ 2021-12-19 14:36 ` Lars Ingebrigtsen
2021-12-19 19:06 ` Dominik Schrempf
0 siblings, 1 reply; 8+ messages in thread
From: Lars Ingebrigtsen @ 2021-12-19 14:36 UTC (permalink / raw)
To: Dominik Schrempf; +Cc: 52354
Dominik Schrempf <dominik.schrempf@gmail.com> writes:
> Thank you for working on this. I just checked with a newer Emacs build including
> the fix of bug 52354, and sorting still does not work. I think this is because
> the relevant entries (PhdThesis and TechReport) were mistakenly added to
> `bibtex-BibTeX-entry-alist`, and not `bibtex-biblatex-entry-alist`.
>
> I am referring to commit af1c5ec0fcd3f25234cfe2986c873ff2e5ed63a0.
As far as I can tell, that commit adds the entries to
`bibtex-biblatex-entry-alist'.
--
(domestic pets only, the antidote for overdose, milk.)
bloggy blog: http://lars.ingebrigtsen.no
^ permalink raw reply [flat|nested] 8+ messages in thread
* bug#52354: 27.2; bibtex-sort-buffers fails at least for types @PhdThesis and @TechReport
2021-12-19 14:36 ` Lars Ingebrigtsen
@ 2021-12-19 19:06 ` Dominik Schrempf
2021-12-20 10:03 ` Lars Ingebrigtsen
0 siblings, 1 reply; 8+ messages in thread
From: Dominik Schrempf @ 2021-12-19 19:06 UTC (permalink / raw)
To: Lars Ingebrigtsen; +Cc: 52354
[-- Attachment #1: Type: text/plain, Size: 902 bytes --]
Hello,
thank you! You are correct.
My Emacs repository was pointing to a 16 day old commit, which I did not
realize. Further, the PhdThesis and TechReport entries are already in
`bibtex-BibTeX-entry-alist`, which led to the confusion and the sorting still
being broken here.
Sorry!
Dominik
Lars Ingebrigtsen <larsi@gnus.org> writes:
> Dominik Schrempf <dominik.schrempf@gmail.com> writes:
>
>> Thank you for working on this. I just checked with a newer Emacs build including
>> the fix of bug 52354, and sorting still does not work. I think this is because
>> the relevant entries (PhdThesis and TechReport) were mistakenly added to
>> `bibtex-BibTeX-entry-alist`, and not `bibtex-biblatex-entry-alist`.
>>
>> I am referring to commit af1c5ec0fcd3f25234cfe2986c873ff2e5ed63a0.
>
> As far as I can tell, that commit adds the entries to
> `bibtex-biblatex-entry-alist’.
^ permalink raw reply [flat|nested] 8+ messages in thread
* bug#52354: 27.2; bibtex-sort-buffers fails at least for types @PhdThesis and @TechReport
2021-12-19 19:06 ` Dominik Schrempf
@ 2021-12-20 10:03 ` Lars Ingebrigtsen
0 siblings, 0 replies; 8+ messages in thread
From: Lars Ingebrigtsen @ 2021-12-20 10:03 UTC (permalink / raw)
To: Dominik Schrempf; +Cc: 52354
Dominik Schrempf <dominik.schrempf@gmail.com> writes:
> My Emacs repository was pointing to a 16 day old commit, which I did not
> realize. Further, the PhdThesis and TechReport entries are already in
> `bibtex-BibTeX-entry-alist`, which led to the confusion and the sorting still
> being broken here.
>
> Sorry!
No problem; thanks for checking. 😀
--
(domestic pets only, the antidote for overdose, milk.)
bloggy blog: http://lars.ingebrigtsen.no
^ permalink raw reply [flat|nested] 8+ messages in thread
end of thread, other threads:[~2021-12-20 10:03 UTC | newest]
Thread overview: 8+ messages (download: mbox.gz follow: Atom feed
-- links below jump to the message on this page --
2021-12-07 15:01 bug#52354: 27.2; bibtex-sort-buffers fails at least for types @PhdThesis and @TechReport Dominik Schrempf
2021-12-10 12:22 ` Lars Ingebrigtsen
2021-12-10 13:32 ` Dominik Schrempf
2021-12-11 3:16 ` Lars Ingebrigtsen
2021-12-19 14:30 ` Dominik Schrempf
2021-12-19 14:36 ` Lars Ingebrigtsen
2021-12-19 19:06 ` Dominik Schrempf
2021-12-20 10:03 ` Lars Ingebrigtsen
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