From: Matt <matt@excalamus.com>
To: "Jack Kamm" <jackkamm@tatersworld.org>
Cc: "emacs-orgmode" <emacs-orgmode@gnu.org>
Subject: [BUG] conda doesn't work in ob-shell sessions
Date: Mon, 13 Feb 2023 15:11:31 -0500 [thread overview]
Message-ID: <1864c676b9f.e1bae673679825.2955884247216895930@excalamus.com> (raw)
In-Reply-To: <87357a2r27.fsf@gmail.com>
---- On Sun, 12 Feb 2023 22:16:16 -0500 Jack Kamm wrote ---
> But I also noticed another prompt-related issue: conda doesn't seem to
> work in ob-shell sessions anymore. That is a bigger problem for my use
> case.
Could you elaborate?
It looks like conda has a new init (from what I remember) which requires users to run a `conda init <shell>' command in order to create a new environment. For example, I needed to run `conda init bash.' This added garbage to my .bashrc which automatically enabled the base environment. I was able to do this from ob-shell, however it required me to reload the shell (I reloaded Emacs to be sure I got the latest environment variables). After this, I was able to create and activate a new conda environment.
1. M-x shell
2. Executing the following in sequence:
#+begin_src emacs-lisp
(org-version nil t)
#+end_src
#+RESULTS:
: Org mode version 9.6.1 (release_9.6.1-250-ge6353d @ /home/user/Projects/org-mode/lisp/)
#+begin_src emacs-lisp
(org-babel-do-load-languages
'org-babel-load-languages
'((shell . t)))
#+end_src
#+begin_src sh :session *shell* :results output
conda create --yes --name myenv python=3.9
#+end_src
#+RESULTS:
#+begin_example
<results removed for brevity>
Downloading and Extracting Packages
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
To activate this environment, use
conda activate myenv
To deactivate an active environment, use
conda deactivate
#+end_example
#+begin_src sh :session *shell* :results output
conda activate myenv
#+end_src
#+RESULTS:
#+begin_src sh :session *shell* :results output
which python
#+end_src
#+RESULTS:
: /home/user/miniconda3/envs/myenv/bin/python
The *shell* buffer's prompt also showed the expected [myenv] prefix.
next prev parent reply other threads:[~2023-02-13 20:12 UTC|newest]
Thread overview: 74+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-02-06 19:39 [PATCH] Async evaluation in ob-shell Matt
2023-02-07 11:40 ` Ihor Radchenko
2023-02-09 4:33 ` Matt
2023-02-09 11:24 ` Ihor Radchenko
2023-02-10 22:19 ` Matt
2023-02-11 11:44 ` Ihor Radchenko
2023-02-12 19:32 ` Matt
2023-02-15 15:08 ` Ihor Radchenko
2023-02-16 4:02 ` Matt
2023-02-17 10:44 ` Ihor Radchenko
2023-02-19 23:14 ` Matt
2023-02-20 11:24 ` Ihor Radchenko
2023-02-20 17:24 ` Matt
2023-02-22 10:30 ` Ihor Radchenko
2023-03-02 1:36 ` Matt
2023-03-03 14:52 ` Ihor Radchenko
2023-03-03 17:53 ` Matt
2023-03-05 12:15 ` Ihor Radchenko
2023-03-06 6:45 ` Matt
2023-03-07 12:45 ` Ihor Radchenko
2023-03-09 17:36 ` Matt
2023-03-10 1:52 ` Max Nikulin
2023-03-12 16:28 ` Jack Kamm
2023-03-18 10:48 ` Ihor Radchenko
2023-03-21 20:29 ` Matt
2023-03-22 12:12 ` Ihor Radchenko
2023-03-23 11:50 ` Ihor Radchenko
2023-03-23 19:35 ` Matt
2023-03-24 9:13 ` Ihor Radchenko
2023-03-28 2:53 ` Matt
2023-03-28 10:06 ` Ihor Radchenko
2023-04-17 15:31 ` Matt
2023-04-17 18:55 ` Ihor Radchenko
2023-04-17 18:56 ` Matt
2023-04-17 19:05 ` Ihor Radchenko
2023-03-23 3:25 ` [SUGGESTION] ob-shell async result output should not contains shell prompt Christopher M. Miles
2023-03-23 4:21 ` Matt
2023-03-23 11:12 ` Christopher M. Miles
2023-03-23 16:23 ` Matt
2023-03-24 11:20 ` Ihor Radchenko
2023-03-23 16:26 ` Remove "shell" as a supported Babel language within ob-shell.el (was Re: [SUGGESTION] ob-shell async result output should not contains shell prompt) Matt
2023-03-24 1:53 ` Remove "shell" as a supported Babel language within ob-shell.el Christopher M. Miles
2023-03-24 11:38 ` Remove "shell" as a supported Babel language within ob-shell.el (was Re: [SUGGESTION] ob-shell async result output should not contains shell prompt) Ihor Radchenko
2023-03-25 5:47 ` Samuel Wales
2023-03-25 18:07 ` Ihor Radchenko
2023-03-28 2:33 ` Matt
2023-02-11 20:56 ` [PATCH] Async evaluation in ob-shell jackkamm
2023-02-12 19:02 ` Matt
2023-02-13 3:16 ` Jack Kamm
2023-02-13 17:07 ` [BUG] shell sessions started outside of Babel broken Matt
2023-02-15 6:19 ` Jack Kamm
2023-02-16 12:53 ` Ihor Radchenko
2023-02-19 15:04 ` Jack Kamm
2023-02-20 11:22 ` Ihor Radchenko
2023-02-21 5:23 ` Jack Kamm
2023-02-22 10:38 ` Ihor Radchenko
2023-03-25 16:55 ` Jack Kamm
2023-03-25 16:59 ` [PATCH] Fix externally started sessions with ob-python Jack Kamm
2023-02-13 20:11 ` Matt [this message]
2023-02-15 6:21 ` [BUG] conda doesn't work in ob-shell sessions Jack Kamm
2024-01-18 11:55 ` Ihor Radchenko
2024-01-21 22:48 ` Jack Kamm
2024-01-22 3:42 ` Jack Kamm
2024-01-22 11:59 ` Ihor Radchenko
2024-01-23 6:09 ` Jack Kamm
2024-01-24 15:22 ` Ihor Radchenko
2024-01-25 19:14 ` Matt
2024-01-25 20:36 ` Ihor Radchenko
2024-01-26 0:42 ` Jack Kamm
2024-01-27 10:25 ` Matt
2024-02-09 16:37 ` Ihor Radchenko
2024-01-23 18:51 ` Suhail Singh
-- strict thread matches above, loose matches on Subject: below --
2024-10-23 15:33 Cook, Malcolm
2024-12-15 14:22 ` Ihor Radchenko
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
List information: https://www.orgmode.org/
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=1864c676b9f.e1bae673679825.2955884247216895930@excalamus.com \
--to=matt@excalamus.com \
--cc=emacs-orgmode@gnu.org \
--cc=jackkamm@tatersworld.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this public inbox
https://git.savannah.gnu.org/cgit/emacs/org-mode.git
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).